Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02378 ATGAAGCTAGTTCTGGAAGGCATAGTGCACATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCAGTTCCAAAACTGGCTGGTCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATAAATTACCTTAGGCCAGATTTGAAGAGAGGGGCATTCTCACAGCAAGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATTGCTGCTCAGTTACCTGGAAGAACTGACAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAGCCCCTATCGGAGGTTGAGAATGACAAGGACAAGCCTCTCGCAACTGAAAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCCAAACAAAAGCCAATAACTACTACTACTTCTATGCCTATGGATAGATATCCCCTTGAAGTTTCTGCTACCTCAAAGATCAGCAGTGGCAACAACAACAGCAGCACCCTAGAAAGGTTTGGCACCTGCCATGACAACAACAGTTCCATCACTAGTTCTGATATGATGGGAATGGGGTATTTCCCTTTCCAGCACCTAAACTATGGACCAAACATGGGACTCACTACTGCCAACCCCAACAGTATCCCACTTTGTTTCATTCCAGGTTCCACTTCTTCCCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGCTAGCCTCCAGTCTAATAACTTATCCTCTGATGCGGTTCAGAACTGGGAAGGAAGTACCTTCAGTAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGTAGTATCCAATTACAAAGCAGCACTAACTTCCTTGATCATAGCAGCACAATAACATGGGGTCTGCAAGCAGAATCTGCCACCAAGGCAGAAAATAAAGATGCTCATTCTTCTCATGTGGTACCCTTGCAATCAGATCAAGAAGACATTAAGTGGTCTGAGTATCTGAACAACACCCCTTTTTTCCTGGGAACCACAGTGCAGCAGCATCAAACCACTCACCCTCTCTACAGTGATGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCACTTGGCACCACAGCCAGCATTTTCAACCCTCGGATATATATAGCAAAGATCTTCAGAGATTTTCAGTTGCTTTTGGACAAACCCTGTAG 1326 0.4563 MKLVLEGIVHMGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLATERSNQKASNEVSVVEPPKQKPITTTTSMPMDRYPLEVSATSKISSGNNNSSTLERFGTCHDNNSSITSSDMMGMGYFPFQHLNYGPNMGLTTANPNSIPLCFIPGSTSSQMMSELNSTMLHSVFSTHVKPTASLQSNNLSSDAVQNWEGSTFSNNNNASKSNGSSSCSIQLQSSTNFLDHSSTITWGLQAESATKAENKDAHSSHVVPLQSDQEDIKWSEYLNNTPFFLGTTVQQHQTTHPLYSDEVKPETAFIADESSTTWHHSQHFQPSDIYSKDLQRFSVAFGQTL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02378 441 MobiDBLite consensus disorder prediction 154 180 - -
Spst1g02378 441 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Spst1g02378 441 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Spst1g02378 441 Gene3D - 21 77 - -
Spst1g02378 441 SMART sant 76 124 IPR001005 -
Spst1g02378 441 SMART sant 23 73 IPR001005 -
Spst1g02378 441 MobiDBLite consensus disorder prediction 129 180 - -
Spst1g02378 441 CDD SANT 79 119 IPR001005 -
Spst1g02378 441 PANTHER MYB DOMAIN PROTEIN 55 11 343 - -
Spst1g02378 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Spst1g02378 441 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Spst1g02378 441 FunFam MYB transcription factor 78 150 - -
Spst1g02378 441 MobiDBLite consensus disorder prediction 139 153 - -
Spst1g02378 441 Gene3D - 78 159 - -
Spst1g02378 441 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Spst1g02378 441 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Spst1g02378 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Spst1g02378 441 CDD SANT 27 71 IPR001005 -
Spst1g02378 441 FunFam Myb transcription factor 21 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02378 Spst-Chr1 32347316 32349155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02378 11 441 MYB Transcription Factor Family AT1G09540 47.797 4.02e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02378 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02378 K09422 - gmx:100788976 716.842