Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02377 ATGCCTCTGCATGAGTTTCACCGCGTGAATAAGGGGAAACTTAACACTGAAAAGATGAACAATAACAGTTGTGCACCTGATCAATCTTCTGCACCCAACAATGATTTGTTTGAGCTGGTTTGGAAAAAGGGTCAGATTTCGTTACAGGGTCAGTCCAGTAGAGCAAGAATGAACCCAAATTGTAAAACTTTGCCATCTCATTGCTCACCATCTCACACTCCTCCAGGATATGCTAACAATAATAATGTTACCATCACAAGGATGGGGAAGTATGGGAATTTGGGAGCTGAGTTGAATGAAGTTAGAAGGTTGGTCCCTTCAGGTGAGGTGGATTTGAGTGAAGAAGAGGAAGACATGGTGATGCCTTGGTTGAATTATGGAATGGATGACTCTTTGCAACATGGATATAGTTCTGATTTTTTGCATGAACTATATGGGGTCACCATGAATGAGCCTTCAGCATCAAATAATTTTTCTTCGTTAGATAGAAGAAATAGTGGTAGTAAGGTATTTAGGGACACTAATAAAAACACTCTATTTGCATCAGCTAGATCCAAGGTGGCAGATATAGCTGAAAATAATACAAATATTATTCCATCTTCCTCAAGTGGTTTTTCTAGCTTGAAGATGGAGAAGCAAGGTCCAGTTATGTGTAGCAATAGTTCCAACATGATGAATTTTTCCCATTTTGCAAAGCCTGCTGCTATTGTCAAAGCTTACCTTCAGAACATTGGCTTGACATCAAGATCAGGAATTGTGGGACTAAAGATTAAAGGTGCTGCTGCTGCAACTGTAAGTGTAACCAATCCTTCTGAATCAACGAAAGTTGAATTAAGTGGCGAGTGTTCAAAGAAAGCATCCATACAAAGTCATCAGGTTACGGAGCCAAAAACTCTGGAGCAGGATGGTAGTGTCTCTACAAAGTGTGACCCTTCTTGCAAAGATGTGTCCAGGATTGATCAAACTTCAATTGGGGTCGTTGGAGAAAGTGGGAATAAAGGAAAGGAAGCTATTGGAAAAAATGTGGAGCCAGCTGTAGTCTCCTCCTCTGTTTGCTCTGGCAATGGTGCAGGGAGGGGTTCGAAGGATCCAAATGAAAATTTGAAGAGAAAAAGTACAGACACAGAGGACTTTGATAGCCAAACTGATGATGTTGAGGAAGAATCAGTTGATGTTAGAAAGGAGGTTCCTGCACGACGAATTGGAGCCAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAATACCAAATTGCAATAAGACGGATAAAGCTTCAATGTTGGATGAGGCAATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATAATGTCAATGGGAACTGGTTTATACTTGCCTGCAATGATGTTACCTCCGGGAATCCAACACATGCATGCAGCACATATGGGCCCTTTTTCTCCTATAGGTGTTGGCATGCAAATGAGGTTAGGAGTGGGTTGTGGCATGGGCATGGGCCTGCATGATGCTAATGCTGAGTCTTCTAGATTTCCAATGATTCAAGTACCCCAAATGCAAGGAACTAAATTTCCCATTGCACATGCACCTGGTTCCACGATGCCAAGACCAAATGCTCAAGTTTTTGGGCTTCCAAGTCAGGTTCACCCCATGCCAATGCCACATGCTCCCATGTTTTCATTTCCAGGGGAACCCTTTATGAGACCATCGACTTTAGGACTAAATGCCCGTGAAACAGGACTTAAGGAAAATGTTGATTCGGTTTCAGCCTCTAGCTTAAAGGATCCTATGCCACATGCGAATTCACAAGATGCACAAAACACCAATTGTTGTAGCTCAACGACTAAGATGTCAACACAGTGTGAAGCAACAATTGGTGGGTTTGAACACTCAACTTTGGTACGTAATAGTGGTCATGACACTTCGGCGAAAGACACAGGAGCTACTAATCCCCAGTAA 1992 0.4217 MPLHEFHRVNKGKLNTEKMNNNSCAPDQSSAPNNDLFELVWKKGQISLQGQSSRARMNPNCKTLPSHCSPSHTPPGYANNNNVTITRMGKYGNLGAELNEVRRLVPSGEVDLSEEEEDMVMPWLNYGMDDSLQHGYSSDFLHELYGVTMNEPSASNNFSSLDRRNSGSKVFRDTNKNTLFASARSKVADIAENNTNIIPSSSSGFSSLKMEKQGPVMCSNSSNMMNFSHFAKPAAIVKAYLQNIGLTSRSGIVGLKIKGAAAATVSVTNPSESTKVELSGECSKKASIQSHQVTEPKTLEQDGSVSTKCDPSCKDVSRIDQTSIGVVGESGNKGKEAIGKNVEPAVVSSSVCSGNGAGRGSKDPNENLKRKSTDTEDFDSQTDDVEEESVDVRKEVPARRIGAKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKTDKASMLDEAIEYLKTLQLQLQIMSMGTGLYLPAMMLPPGIQHMHAAHMGPFSPIGVGMQMRLGVGCGMGMGLHDANAESSRFPMIQVPQMQGTKFPIAHAPGSTMPRPNAQVFGLPSQVHPMPMPHAPMFSFPGEPFMRPSTLGLNARETGLKENVDSVSASSLKDPMPHANSQDAQNTNCCSSTTKMSTQCEATIGGFEHSTLVRNSGHDTSAKDTGATNPQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02377 663 MobiDBLite consensus disorder prediction 286 312 - -
Spst1g02377 663 CDD bHLH_AtPIF_like 407 469 IPR047265 -
Spst1g02377 663 PANTHER TRANSCRIPTION FACTOR PIF3 1 628 IPR044273 GO:0003700|GO:0006355
Spst1g02377 663 Gene3D - 402 464 IPR036638 GO:0046983
Spst1g02377 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 405 467 IPR036638 GO:0046983
Spst1g02377 663 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g02377 663 SMART finulus 413 462 IPR011598 GO:0046983
Spst1g02377 663 MobiDBLite consensus disorder prediction 15 31 - -
Spst1g02377 663 MobiDBLite consensus disorder prediction 363 378 - -
Spst1g02377 663 FunFam Basic helix-loop-helix transcription factor 402 465 - -
Spst1g02377 663 Pfam Helix-loop-helix DNA-binding domain 411 457 IPR011598 GO:0046983
Spst1g02377 663 MobiDBLite consensus disorder prediction 643 663 - -
Spst1g02377 663 MobiDBLite consensus disorder prediction 349 394 - -
Spst1g02377 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 407 456 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02377 Spst-Chr1 32330309 32333420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02377 1 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.673 4.04e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g02377 HLH 7.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02377 K12126 - gmx:102659557 876.315