Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02365 ATGGGCGGAGATGGAGCGACAGCGAACGCGGAAGTGCAGTACGCCACGGCAAAGATTTCGGTGTGGTGGGACATCGAAAACTGCCACGTTCCCAAGGGTTCGGATCCGCACGTGATCGCGCAGAACATCAGCTCCACGCTGGTCCGCATGAACTACTGTGGCCCCGTCTCCATCTCCGCCTACGGCGACACCACGCGCATCCCCGCCTCTGTACAGCACGCGCTCTCCAGCACCGGAATCTCCCTCAACCACGTCCCCGCCGGCGTGAAAGACGCAATTGACAAGAAGATTCTTGTTGATATGCTATTCTGGGCAGTGGACAATCCCGCACCCGCTAATTATTTACTAATTTCGGGTGATCGAGAATTCTCAAATGCTCTCCATCAACTTCGGCTGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCAGCACCCTTGGTTGCTGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTTTTAGCTGGAGGACCTCCTCTTTCTAATGGTGAATCACAACAACTTGGTAATGGTGGCCTTAGCCATGTATCATCTTCTGACTCCTTACAAATTCCGATTACAAGTGCTGCTCAAATGCAGCAACTGGTGGAATCCTATTCTGAACTTGATGTAGGAAATTCAAAAATCCCAAATGGAGGAAGGGGATTCGACTCTAGATTTCAGGGTAAACCTAATTGGAGAAACCCGAGTCAATCAAATGCACCCAGAGCCATGAATCCACCACCACCTGGACTTCAAGATAATCGTAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCGCTGAGTGGATCTGCTACAAATTATGTTCATGGCAATACTGATCAGTTATGGAGCAATAACAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAGGACCAAACAACTTCCCATTGCAACTTCCTTTTGCTCCTAGTAATTCATATACTCCAAATTCCCATACTTTTGCAACTTCAATGGTGCCACCTAGGACTGGTGGTCCCAATTTCAACTCAGGGTCACATACCAAAGTGCCAGATATTGGTAATCTGAATATTTCTGGATATCCTAATGGTGTTCATAACCCACCTACTATTCCACAACGGAATGGAGAGTTGAAACAGAATCCTAATAGTAGTGCCCCACATCTTTTAAGATCAATTGATGAAAAAAATGGACATATGGTACATAACAGTTTCACACAACAATTACATCAAAGTTATCAACATGGTCCAGAATATCAACCAACTCCCTCGGCAGCAATGGGTAATAATAACCCTTCTGGTAATGGTATGTGGGGTTCTCCAGGATGTCCTAAACCTTCTGAGTATGTACAGGGCCTAATAGGAGTTGTTTTACTTGCCTTAAACTCACTAAAAAATGCCAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTTTGGAGATCCCAAGCACCGCAATACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAACAGAATATGGTGGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTTTGGAAATGCGTTAATCCTCTAGGTGGTAATCCTAAGCAGCACTCAAAAGAAACATGGGATGAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACACAGTGCAAGTATGAAGCAGGTATTGTGATTAAGAATATGTGCTTTAAAGATCTCTCTTTGGGTGATGTTTTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATCATCCATCTGGTTGGCAACCACTTAACATTGCTCTTCCTGAGACAAACCCTGGTTTAGGGGTTGGTGAACTGTGGAATGCGAGTCCTGAAGCTGTTGTTGTATTGGCTTTTGTTTTCGTTGGTGGTTGCATGTCTTCGAAATGCTACAGGAAGTTAAACCACCGGACAGGGAACTCTTAA 2001 0.4383 MGGDGATANAEVQYATAKISVWWDIENCHVPKGSDPHVIAQNISSTLVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDAIDKKILVDMLFWAVDNPAPANYLLISGDREFSNALHQLRLRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGGLSHVSSSDSLQIPITSAAQMQQLVESYSELDVGNSKIPNGGRGFDSRFQGKPNWRNPSQSNAPRAMNPPPPGLQDNRNRNNINSYRPGNFNPNVPLSGSATNYVHGNTDQLWSNNSNLQGNHQVPYSQPLGPNNFPLQLPFAPSNSYTPNSHTFATSMVPPRTGGPNFNSGSHTKVPDIGNLNISGYPNGVHNPPTIPQRNGELKQNPNSSAPHLLRSIDEKNGHMVHNSFTQQLHQSYQHGPEYQPTPSAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKETWDEIEKFLTTPAGRSAIMATQCKYEAGIVIKNMCFKDLSLGDVFQILNMLITHKKWIAHHPSGWQPLNIALPETNPGLGVGELWNASPEAVVVLAFVFVGGCMSSKCYRKLNHRTGNS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02365 666 Gene3D - 9 161 - -
Spst1g02365 666 MobiDBLite consensus disorder prediction 421 447 - -
Spst1g02365 666 PANTHER LIMKAIN B LKAP 13 512 IPR024768 GO:0005777|GO:0010468
Spst1g02365 666 Pfam OST-HTH Associated domain 569 617 IPR025677 -
Spst1g02365 666 MobiDBLite consensus disorder prediction 377 396 - -
Spst1g02365 666 CDD PIN_limkain_b1_N_like 18 142 - -
Spst1g02365 666 MobiDBLite consensus disorder prediction 215 258 - -
Spst1g02365 666 MobiDBLite consensus disorder prediction 421 444 - -
Spst1g02365 666 Pfam NYN domain 18 154 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02365 Spst-Chr1 32258997 32261856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02365 8 200 C2H2 Transcription Factor Family AT5G61190 68.912 9.62e-84 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02365 - - gmx:100794608 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02365 1 32258997 32261856 Spst1g02365 1 32258997 32261856 ECH