Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02336 ATGGCGTCTTTCAATTCAAACCTCCACTCTGTTACGACATCGCAACAATCCAATCACAAGAAGCGCCGCAAACTCACGCACCATGCTTCCCTCACTCCCGCTCGCTGGACTTCCCAAACCGAACACCGCATCTACGCCTCCAATCTCCTCCACGCGCTCCGCCGTAACAGCCCTGTCGCCGCTCGCCATGTCCGCGCCGACGCTGACCGCACCCTCGCCTCCGCTGCCAAGGGCCGAACCCGATGGAGCCGCGCGATCCTCGCGAATCCGTTTGGCCGGTGGAAGCAGAGGCACCTGAAGAGGATAAGGAAGCCCGGCACCGGATTGATGAAGAAGAGGACGCCGGAGATTCGCCGAACGGTGCCGCCGCTGCAGAAGAAAGTGCGAGTTCTCGGACGGTTAATCCCCGGTTGCCGGAAGGTGTCGTTCCCGAAGCTTCTGGAAGAAGCCGGTGACTATATCTCTGCCTTGAAGATGCAAGTGCGAGCCATGACTGCTCTCGCCGACCTTCTCGCCGGCGGTCCGTTGCCACTCGCTCAGCTCCGATTGAGTTGA 555 0.6054 MASFNSNLHSVTTSQQSNHKKRRKLTHHASLTPARWTSQTEHRIYASNLLHALRRNSPVAARHVRADADRTLASAAKGRTRWSRAILANPFGRWKQRHLKRIRKPGTGLMKKRTPEIRRTVPPLQKKVRVLGRLIPGCRKVSFPKLLEEAGDYISALKMQVRAMTALADLLAGGPLPLAQLRLS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02336 184 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 38 171 IPR044660 GO:0006355
Spst1g02336 184 MobiDBLite consensus disorder prediction 1 37 - -
Spst1g02336 184 MobiDBLite consensus disorder prediction 1 15 - -
Spst1g02336 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 178 IPR036638 GO:0046983
Spst1g02336 184 CDD bHLH_AtIBH1_like 118 168 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02336 Spst-Chr1 31995471 31996025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02336 35 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 45.205 2.68e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02336 - - gmx:100813766 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02336 1 31995471 31996025 Spst10g01773 10 18149731 18150324 ECH
Spst1g02336 1 31995471 31996025 Spst1g02336 1 31995471 31996025 ECH
Spst1g02336 1 31995471 31996025 Spst10g01773 10 18149731 18150324 PCT