Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02329 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGCCTTGTCTAGAGGATGTGGTTAGAGTTGGGAACGCCGGCGTTGCAGCTGCTACTACTACTTCGGATATGCGTCTAGGAACAACAGCTAATTGTTACTTGCAGCTACAAGCACCTGAACAGAATGTAACCGAGTCTGATATGACGGATCGGATGATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTTTCTGCATACATAGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGACATGCCTTCTCGACGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATGGGTGATGGTCCTGAACTTGACCAGTTCATGGAAACATACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACTTTGTTTTTGGGAAACATGGAATCACAGCTGAGCAACCTTTGTAATGGAACACTAACAAAGTCATCGGATGACAAATATTCCGATGAAGTAGGTTGTGGGGCATCGGATGAAGAATTATGTTGTGGGGAGATGGAAGAAGTTGAAGGTCATATATCTTCTTCTGTAACTTGCCCAGGTGATCAAAATCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAGTTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACACATAATAAATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTGACAGCAATGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCTGTCATGGATAGGTTTAGTGGCGGCGGTGGCGGTGGCATAGGAGGAGCTATGTTCTTTTAG 948 0.4504 MEAVYRLKPLLPCLEDVVRVGNAGVAAATTTSDMRLGTTANCYLQLQAPEQNVTESDMTDRMIKIQIANHPLYPDLLSAYIECQKVGAPPELTCLLDEIGRESHRMNARREMGDGPELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLTKSSDDKYSDEVGCGASDEELCCGEMEEVEGHISSSVTCPGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHNKWPYPTEEEKVKLTAMTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDRFSGGGGGGIGGAMFF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02329 315 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Spst1g02329 315 Pfam ELK domain 207 227 IPR005539 GO:0003677
Spst1g02329 315 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Spst1g02329 315 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Spst1g02329 315 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Spst1g02329 315 Pfam KNOX2 domain 112 158 IPR005541 GO:0003677|GO:0005634
Spst1g02329 315 CDD homeodomain 229 289 IPR001356 GO:0003677
Spst1g02329 315 SMART ELK_2 206 227 IPR005539 GO:0003677
Spst1g02329 315 SUPERFAMILY Homeodomain-like 228 301 IPR009057 -
Spst1g02329 315 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
Spst1g02329 315 Gene3D - 224 297 - -
Spst1g02329 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 296 - -
Spst1g02329 315 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Spst1g02329 315 SMART HOX_1 228 293 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02329 Spst-Chr1 31939174 31942637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02329 48 304 Homeobox Transcription Factor Family AT1G23380 52.852 5.78e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst1g02329 KNOX2 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02329 - - gmx:100814830 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02329 1 31939174 31942637 Spst1g02329 1 31939174 31942637 ECH
Spst1g02329 1 31939174 31942637 Spst10g01764 10 18016742 18020179 PCT