Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02315 ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGTAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCGGAATCCCGCAATCGCCGGAGAAGCCAAGCGCCGGTTTCAACAAATCCAAGAAGCCTACTCAGTTCTTTCCGATCAGTCTAAAAGGTCAATGTACGATGTGGGGCTCTACGACCCTTTGGAGGAAGAAGACCAAGAGTTTTGTGATTTCATGCAGGAGATGATATCGATGATGAACAATGTGAAAGACGAGGGGGACAGTATGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGGTGATGGGATCGGCATTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGAGTTAATGGATCAAGGGGTACTGCGGCCAAGCGCAACAACTCTCGCACTTAG 483 0.528 MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWARNPAIAGEAKRRFQQIQEAYSVLSDQSKRSMYDVGLYDPLEEEDQEFCDFMQEMISMMNNVKDEGDSMEDLQRMFVEMVGGDGIGIDLNQDQTAGKRGRVNGSRGTAAKRNNSRT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02315 160 Gene3D DnaJ domain 2 104 IPR036869 -
Spst1g02315 160 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Spst1g02315 160 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Spst1g02315 160 SMART dnaj_3 11 73 IPR001623 -
Spst1g02315 160 MobiDBLite consensus disorder prediction 132 160 - -
Spst1g02315 160 Pfam DnaJ domain 13 78 IPR001623 -
Spst1g02315 160 PRINTS DnaJ domain signature 14 32 IPR001623 -
Spst1g02315 160 PRINTS DnaJ domain signature 32 47 IPR001623 -
Spst1g02315 160 PRINTS DnaJ domain signature 53 73 IPR001623 -
Spst1g02315 160 SUPERFAMILY Chaperone J-domain 12 84 IPR036869 -
Spst1g02315 160 CDD DnaJ 12 70 IPR001623 -
Spst1g02315 160 PANTHER PUTATIVE, EXPRESSED-RELATED 7 129 - -
Spst1g02315 160 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02315 Spst-Chr1 31846460 31847337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02315 12 78 C2H2 Transcription Factor Family AT1G74250 44.118 2.02e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02315 - - gmx:548049 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02315 1 31846460 31847337 Spst1g02315 1 31846460 31847337 ECH