Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02312 ATGATGGATCTGAAGGAATGGTCGTCTTCAGAGCTGAAGGAGAACAAGAAATGTTGCGCTGATTGCAAAACGACCAGGACCCCACTGTGGAGAGGAGGACCAGCTGGACCCAAGGCCCAACAACACCCATTCCTATTTCATTTTTCCATTTCCCCACCGTGTGGGCTATGGGCTGAATTATTGATTTATTTATTTGTTGTTGATGCAGACGCTGTGCAACGCTTGTGGAATCAGGTACCGGAAGAGAAGGAGTTGTTCCAGGAAGAGAGAGGAGGTGGTGGTGTTGCAGCAGCGGACATCATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAAGCGGCTGTGTGTTTGATGGCCTTGTCCTGTGGTTTTGCTTTCGCTTGAACTCCAATCATTCCTTCACTTACCACATTCCAGGCTCCATGATTTTTTCATTATTACATCTACCTAGATGTAGAATACCAAGATTAACTAATTATTGGGGAGAAACCTTCCACAGTTTCAGCACGACTTGTGGAAACAATTCTAGCATAAGGCCGATTGGTTATAGAATTTATGGTCTTCAGGGAGAACAGAGAAAGAAATGGACAAGACCTATAACTACAAATGCAGAAGGCAAGGGGAACATCAAATCAAAAAGTATCAAGCAAAAAATTTTGAGTGAAACCATTTTAGCAGGTGCTACAGTAGGTGTAAATAAAACACAGCTAGATCAATTCCAGGAAAATCAGTATTGTGACATACAACAAGAGATTGCCCAGAATAAAGACTTGTCTAGCTTAGTTACTGTTATTGTTTTTGACATCGAGACCACAGGGCTTAGCAGAGAGAATGAAAGGATCATTGAAATTGCACTTCGAGATCTTCAGGGTGGTGAGAACAGCACATTTCAGACTCTTGTCAACCCTCAATGCAAAGTTCCTAATTCACGTATTCATGGCATTACTACTCAGATGGTCAATAAACCTGATGTTCCAAGGATGGAGGACCTAATTCCTATCTTATTGCAATATGTCCGAAGTCGTGAGAAACCTGGGGGACATGTGTTATTGGTTGCTCATAATGCTCGTTGTTTTGATGTCCCCTTCATCATGAATGAGTTACGACGTCATTCTATGAAGATGCCTCCTAATTGGTTGTTTTTAGACTCCCTGGCTTTAGGACGTGAACTACTGAAATCTGGAGAAACTGAACTTTCTTCAACTTCCCTTGCTGCCCTTCGTGACCTCTACGGAATTAAAGTGGATGGATCAGCTCACAGAGCTATGGTAGATGTGAACACATTGTCCTTGATTCTTCCTAGGTTGACATGTGATCTGAAATTGACTCTATCTGATCTTGTAAAAAAATCATTCAAAGAATCAGATATTATCAACTCCAAGAAGAAGAAGAATTTAGACTAG 1419 0.4179 MMDLKEWSSSELKENKKCCADCKTTRTPLWRGGPAGPKAQQHPFLFHFSISPPCGLWAELLIYLFVVDADAVQRLWNQVPEEKELFQEERGGGGVAAADIILCCEETEVEDVGRRGTSGCVFDGLVLWFCFRLNSNHSFTYHIPGSMIFSLLHLPRCRIPRLTNYWGETFHSFSTTCGNNSSIRPIGYRIYGLQGEQRKKWTRPITTNAEGKGNIKSKSIKQKILSETILAGATVGVNKTQLDQFQENQYCDIQQEIAQNKDLSSLVTVIVFDIETTGLSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPNSRIHGITTQMVNKPDVPRMEDLIPILLQYVRSREKPGGHVLLVAHNARCFDVPFIMNELRRHSMKMPPNWLFLDSLALGRELLKSGETELSSTSLAALRDLYGIKVDGSAHRAMVDVNTLSLILPRLTCDLKLTLSDLVKKSFKESDIINSKKKKNLD 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02312 472 Gene3D - 267 458 IPR036397 GO:0003676
Spst1g02312 472 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 203 468 IPR040393 GO:0008408
Spst1g02312 472 ProSiteProfiles GATA-type zinc finger domain profile. 13 36 IPR000679 GO:0006355|GO:0043565
Spst1g02312 472 Gene3D - 11 61 IPR013088 GO:0006355|GO:0008270
Spst1g02312 472 SUPERFAMILY Ribonuclease H-like 268 441 IPR012337 -
Spst1g02312 472 CDD DEDDh 270 438 - -
Spst1g02312 472 FunFam Exonuclease DPD1 chloroplastic/mitochondrial 267 451 - -
Spst1g02312 472 SMART exoiiiendus 268 447 IPR013520 -
Spst1g02312 472 Pfam Exonuclease 270 434 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02312 Spst-Chr1 31814475 31823050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02312 3 39 C2C2-Gata Transcription Factor Family AT5G49300 54.054 6.65e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02312 - - gmx:100799702 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02312 1 31814475 31823050 Spst10g00009 10 119312 124114 ECH
Spst1g02312 1 31814475 31823050 Spst1g02312 1 31814475 31823050 ECH
Spst1g02312 1 31814475 31823050 Spst10g00009 10 119312 124114 PCT