Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02305 ATGGTGTTTCAACATGTTCCGGTGTACATGGGTTGTGCCATATTCAACACTATAGACGAGAAAACCACAAAAAGTGACGTGCGGGGGAATCACGTTGTAGCGTTGATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGATAAGAAGGAAGAATGAGAAATGTGGAGGGAGGGAAGCTGCTGAAGCAATGGCAAAGGAGGCTAAGAGGAATGACATGATGCTGTGTAGCTCTGGCATAGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTTTTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGTCAAGAGGACATGATCTTCTGTGGGGTTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCTAAAAGAGTAAGAGAGTCAATGCCATCATCTTTGCTATGCAACTGGCAAGAGACACTAGCCCAAACTTCAGTTGATTCTGGAATTGATGTAGAGGAAGAGAAAAGGCAACTATACCGATTCAACGTGTGGAAGCACTCTTATTTGAAGACTTGTGCTGCCATTGATCAAGAACTGGAGCAGTACCGCAAGATAGACTCATTTTACAGCGGAACAACTGCCCTATCCATTGTTAAACAGGGTGAACTCATTGTCGTAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCTGATGATGGAAGTTTGGTAGCGGTTCAACTAACAGTCGATTTCAAGCCCAATTTACCTCAGGAGGCAGAGAGGATAATTGAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTGTGGTTACCTGATGCAGAATCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGTCTAATTTCTGTGCCTGAGGTAACACACAGAAATATAAGTACTAGAGACCAATTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAATAAAGAAGCAGTGGAAATCGTATCTTCAACAGCAGATAAAGCTAAGGCTGCTAAACGTTTGGTGGAGTCTGCGGTGCGTGCATGGAAACGCAAGAGAAGGGGCATTGCCGTGGATGACATTTCAGCTATTTGTCTTTTCTTTCATTCCTCCCTGTAA 1179 0.4555 MVFQHVPVYMGCAIFNTIDEKTTKSDVRGNHVVALMGHFSSMFNGLARSFSMKIRRKNEKCGGREAAEAMAKEAKRNDMMLCSSGIVHVDGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDMIFCGVFDGHGPWGHFVAKRVRESMPSSLLCNWQETLAQTSVDSGIDVEEEKRQLYRFNVWKHSYLKTCAAIDQELEQYRKIDSFYSGTTALSIVKQGELIVVANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEAERIIECQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISTRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKRLVESAVRAWKRKRRGIAVDDISAICLFFHSSL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02305 392 PANTHER PROTEIN PHOSPHATASE 73 386 IPR015655 GO:0004722|GO:0006470
Spst1g02305 392 Pfam Protein phosphatase 2C 110 367 IPR001932 -
Spst1g02305 392 CDD PP2Cc 94 388 IPR001932 -
Spst1g02305 392 SMART PP2C_4 86 386 IPR001932 -
Spst1g02305 392 FunFam Probable protein phosphatase 2C 34 86 390 - -
Spst1g02305 392 ProSiteProfiles PPM-type phosphatase domain profile. 95 388 IPR001932 -
Spst1g02305 392 SUPERFAMILY PP2C-like 91 389 IPR036457 -
Spst1g02305 392 Gene3D - 87 390 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02305 Spst-Chr1 31763640 31766258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02305 36 389 PP2C-type Phosphatase Gene Family AT3G05640 72.829 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02305 - - vra:106757085 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02305 1 31763640 31766258 Spst1g02305 1 31763640 31766258 ECH
Spst1g02305 1 31763640 31766258 Spst10g00018 10 204827 206571 PCT