Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02296 ATGTCTTATTTGAACTCAGGCGGGACTACAGTTGCGGCGGCCGCGGCTTATAGGGCTGCCACAGCTACAAGGTTTAATGGAATTTCTGGGGAGGCATTCAAATCTCACCATCCATTGCACCACCATCACTCATCATCACACTATGGGGTTGGACTTGGAGCCTCTCATGATGCCTCTTCAGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTGCCGACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGCACACTACACGCTCGATTTGTCCATGCTGTGGAGCTTCTCGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTGAAGACAACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGTGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAGAGAAGCCTATCAGATCGACCAGTGCAACAAGATATGGATTACTCTTCGGCTAATACTCTATGGAGTAATTCTTCAAGCAATGGAGAACCGTGGCCACAAAACAGTGCTAACGACATAGAAGGTTTCCGGCCCCCGATCTTCCAGTCACAACAAATTTCAGGAGGGTATCAAATTCAGGATTGTGATTCAACCAAAGTCAAGAACAGCTTGTCAGGATCATCAAATTTAGAGTGCAAGAACCCGAGCTTGGAGTTTACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAG 807 0.4734 MSYLNSGGTTVAAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGASHDASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRPVQQDMDYSSANTLWSNSSSNGEPWPQNSANDIEGFRPPIFQSQQISGGYQIQDCDSTKVKNSLSGSSNLECKNPSLEFTLGRPDWNGKGQA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02296 268 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 33 265 IPR044847 GO:0000976|GO:0006355|GO:0010158
Spst1g02296 268 MobiDBLite consensus disorder prediction 135 211 - -
Spst1g02296 268 MobiDBLite consensus disorder prediction 161 204 - -
Spst1g02296 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 80 133 IPR006447 GO:0003677
Spst1g02296 268 MobiDBLite consensus disorder prediction 235 268 - -
Spst1g02296 268 FunFam Myb family transcription factor 78 136 - -
Spst1g02296 268 Pfam Myb-like DNA-binding domain 81 132 IPR001005 -
Spst1g02296 268 MobiDBLite consensus disorder prediction 235 251 - -
Spst1g02296 268 Gene3D - 79 136 - -
Spst1g02296 268 SUPERFAMILY Homeodomain-like 77 133 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02296 Spst-Chr1 31649533 31654227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02296 61 265 G2-like Transcription Factor Family AT5G16560 57.339 1.64e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g02296 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02296 - - ccaj:109796302 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02296 1 31649533 31654227 Spst1g02296 1 31649533 31654227 ECH
Spst8g00350 8 3351912 3356121 Spst1g02296 1 31649533 31654227 PCT