Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02273 ATGAATAAGCCATCAACCCTTTTGCTCAATGGTGTCAGTGACTCCATATATGTGGCAACAAAACAATCCAATTTGTCAAAACGGTTGGTGTTTGATTTCCATAGACGTTTTGCTGCTGCAGGTGAACAGAAAATGGGAAGGCAACCTTGTTGTGACAAAGTGGGGTTGAAAAAGGGTCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTTTATCAGAATATGAAGAGAAGATGGTCATTGATCTCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCCTCTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACTCACAAGTCACTTTCCATTGCAACTGAGCAAACTCAAGCCCAACCAGATCAACCACACCATCAAACATTTCAAGAACAACAACAACAACATCAGCAACAAGCTATCCCAGTTGAGAAAGACCCCAAATTTGAGCCTAAAAATGAGGAAAACAAGGAGTCAGAGAAGCCAGAGACTTCATTTGAATCATCAACCATCACTGAAGAAGCTAAGGAAGAAGACCAAATCATGACACCCCTTTTTGACTCGATGGAACTCATGAATGAATTCTGCACTGACGAAGTCCCCATATTAGAACCGAGTGAGATTCTAGTTCCATCTGCTCATTCCACTTCACCAACCACTACATCATCTTCAACCTCATCTTCTTATTCAAATTCCTCCAACTTCTTTGACGACCTGCTGCTCCCAGATTTTGTCTGGTCTGATGATTACAATGATACTAATATTGACAATAACAACAGCAGTATGGCCTTGTGCGATGATGACTTTATTAGAAGTTTGAATTTGCTTATTAATGATGATGGTGATGGGGACAGAAAGCAAGTGTTTGACAATCCTGTCAATCAGTACCCCAGAGTGATCATGGATTCAGAATCTTGGCCATATGGTTTGTTTTGA 1125 0.4169 MNKPSTLLLNGVSDSIYVATKQSNLSKRLVFDFHRRFAAAGEQKMGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSIATEQTQAQPDQPHHQTFQEQQQQHQQQAIPVEKDPKFEPKNEENKESEKPETSFESSTITEEAKEEDQIMTPLFDSMELMNEFCTDEVPILEPSEILVPSAHSTSPTTTSSSTSSSYSNSSNFFDDLLLPDFVWSDDYNDTNIDNNNSSMALCDDDFIRSLNLLINDDGDGDRKQVFDNPVNQYPRVIMDSESWPYGLF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02273 374 MobiDBLite consensus disorder prediction 177 242 - -
Spst1g02273 374 PANTHER F14D16.11-RELATED 45 319 - -
Spst1g02273 374 MobiDBLite consensus disorder prediction 206 227 - -
Spst1g02273 374 ProSiteProfiles Myb-like domain profile. 53 105 IPR001005 -
Spst1g02273 374 CDD SANT 60 105 IPR001005 -
Spst1g02273 374 SUPERFAMILY Homeodomain-like 55 152 IPR009057 -
Spst1g02273 374 CDD SANT 118 156 IPR001005 -
Spst1g02273 374 SMART sant 110 158 IPR001005 -
Spst1g02273 374 SMART sant 57 107 IPR001005 -
Spst1g02273 374 Pfam Myb-like DNA-binding domain 58 105 IPR001005 -
Spst1g02273 374 Pfam Myb-like DNA-binding domain 115 155 IPR001005 -
Spst1g02273 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 160 IPR017930 -
Spst1g02273 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 105 IPR017930 -
Spst1g02273 374 Gene3D - 115 160 - -
Spst1g02273 374 FunFam Myb transcription factor 115 177 - -
Spst1g02273 374 MobiDBLite consensus disorder prediction 177 204 - -
Spst1g02273 374 FunFam MYB transcription factor 55 111 - -
Spst1g02273 374 Gene3D - 55 111 - -
Spst1g02273 374 ProSiteProfiles Myb-like domain profile. 106 156 IPR001005 -
Spst1g02273 374 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02273 Spst-Chr1 31426214 31431372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02273 45 374 MYB Transcription Factor Family AT5G16600 46.322 1.89e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02273 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02273 K09422 - gmx:100803624 510.375