Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02269 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGACCAAGTGGCGCTCTTAATGGTGGAAGAATGGCTGGTGCTCTTAATAGTAGAAGAATGGCTGGCGCTGGTAATGGTGGAAGAACATCTGGTGCTCTTCGAAGAGGTCCTCTTATGGTTAACACCCGGCCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAATCTCTATTCGCAGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCTATGAGTGCTCGGGTCAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACAAGCTGTAGGTCCTGCTATACCTAATCGTGGTACTGGTTGGGGGCGTCGTGGTGGCACCAGGAGTGGTGGCCCAAGGAGTGACAATGGACGTGGACGTGGTGGAGGTCGTCGAGGCAGTGGTCGAGGTGGAGGCCGAGGCCGTGGTAGAAAGGACACTGTTGAGAAGTCCGCAGAGGAACTTGACAAAGAACTGGAGACCTATCATGCCGAGGCCATGAACATCTCTTAG 915 0.4852 MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQSGRGPSGALNGGRMAGALNSRRMAGAGNGGRTSGALRRGPLMVNTRPSSYAIAKASSKISIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPMSARVNVTGVNGRRKRTVVMTPRGGQAVGPAIPNRGTGWGRRGGTRSGGPRSDNGRGRGGGRRGSGRGGGRGRGRKDTVEKSAEELDKELETYHAEAMNIS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02269 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Spst1g02269 304 SMART rrm1_1 122 194 IPR000504 GO:0003723
Spst1g02269 304 MobiDBLite consensus disorder prediction 226 304 - -
Spst1g02269 304 SUPERFAMILY RNA-binding domain, RBD 115 195 IPR035979 GO:0003676
Spst1g02269 304 Coils Coil 279 299 - -
Spst1g02269 304 SMART FoP_duplication_2 232 304 IPR025715 -
Spst1g02269 304 MobiDBLite consensus disorder prediction 273 297 - -
Spst1g02269 304 Gene3D - 116 197 IPR012677 -
Spst1g02269 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Spst1g02269 304 CDD RRM_THOC4 121 195 - -
Spst1g02269 304 Pfam C-terminal duplication domain of Friend of PRMT1 244 298 IPR025715 -
Spst1g02269 304 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 301 - -
Spst1g02269 304 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02269 Spst-Chr1 31370268 31374552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02269 120 195 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.40e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02269 K12881 - gmx:100801491 451.44