Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02269 | ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGACCAAGTGGCGCTCTTAATGGTGGAAGAATGGCTGGTGCTCTTAATAGTAGAAGAATGGCTGGCGCTGGTAATGGTGGAAGAACATCTGGTGCTCTTCGAAGAGGTCCTCTTATGGTTAACACCCGGCCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAATCTCTATTCGCAGAACTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCTATGAGTGCTCGGGTCAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACAAGCTGTAGGTCCTGCTATACCTAATCGTGGTACTGGTTGGGGGCGTCGTGGTGGCACCAGGAGTGGTGGCCCAAGGAGTGACAATGGACGTGGACGTGGTGGAGGTCGTCGAGGCAGTGGTCGAGGTGGAGGCCGAGGCCGTGGTAGAAAGGACACTGTTGAGAAGTCCGCAGAGGAACTTGACAAAGAACTGGAGACCTATCATGCCGAGGCCATGAACATCTCTTAG | 915 | 0.4852 | MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQSGRGPSGALNGGRMAGALNSRRMAGAGNGGRTSGALRRGPLMVNTRPSSYAIAKASSKISIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPMSARVNVTGVNGRRKRTVVMTPRGGQAVGPAIPNRGTGWGRRGGTRSGGPRSDNGRGRGGGRRGSGRGGGRGRGRKDTVEKSAEELDKELETYHAEAMNIS | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02269 | 304 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 198 | IPR000504 | GO:0003723 | |
Spst1g02269 | 304 | SMART | rrm1_1 | 122 | 194 | IPR000504 | GO:0003723 | |
Spst1g02269 | 304 | MobiDBLite | consensus disorder prediction | 226 | 304 | - | - | |
Spst1g02269 | 304 | SUPERFAMILY | RNA-binding domain, RBD | 115 | 195 | IPR035979 | GO:0003676 | |
Spst1g02269 | 304 | Coils | Coil | 279 | 299 | - | - | |
Spst1g02269 | 304 | SMART | FoP_duplication_2 | 232 | 304 | IPR025715 | - | |
Spst1g02269 | 304 | MobiDBLite | consensus disorder prediction | 273 | 297 | - | - | |
Spst1g02269 | 304 | Gene3D | - | 116 | 197 | IPR012677 | - | |
Spst1g02269 | 304 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 191 | IPR000504 | GO:0003723 | |
Spst1g02269 | 304 | CDD | RRM_THOC4 | 121 | 195 | - | - | |
Spst1g02269 | 304 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 244 | 298 | IPR025715 | - | |
Spst1g02269 | 304 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 5 | 301 | - | - | |
Spst1g02269 | 304 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02269 | Spst-Chr1 | 31370268 | 31374552 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02269 | 120 | 195 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 38.158 | 2.40e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02269 | K12881 | - | gmx:100801491 | 451.44 |