Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02268 ATGTTTGGTGGGGATGCGGTTCCTAGGGTTACCCTTGGAATCCGAGGTACCAAACCATCAATCAAACAAACTCTGCAACTAACTTTAATGGAATCTGGAGAGATCATTAATAAATTCCCTTCACTTCCTCCCTACCCCGAGATGATTTTGGAGGCAATTGAGGCACTGAATGAAGGGAATGGTTCGAATAAAACATCAATTTCCAAGTACATAGAATCTAGGTACGGTGTGTTGCCCCCTGGCCACAAGGTACTGCTGAATGTGCACCTTGCAAAAATGAGGGACGCTGGGGTGCTTGACTTTTGGAAGAATAACTACACCAAACGTGACCCAAACGCGCCGCCCCGGCGTGGCCGTGGCAGGCCACCCAAGCCCAGGGAGCCTCTGCCTCCTGGTACTGTCTTGTCACCGCCCAGGCCCAGGGGCCGTCCGCCAAAAGGCCCAAATGACACGCCAAGGCCACCCAAAGCCTTGACTGGTAGTGGCAGGCCAAGAGGCCGGCCCAGGAAGATGGCCCGGCCCGCTGGAGGACTCGGCAAAGCATCACCTTCCCCGGTGACGCCCAGTGGGAGGCCTAGAGGCAGGCCTCCAAGAGTGAAGCCCGAATTGATAGAAACTATGCTTAATAATAATAACTAA 639 0.5352 MFGGDAVPRVTLGIRGTKPSIKQTLQLTLMESGEIINKFPSLPPYPEMILEAIEALNEGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDAGVLDFWKNNYTKRDPNAPPRRGRGRPPKPREPLPPGTVLSPPRPRGRPPKGPNDTPRPPKALTGSGRPRGRPRKMARPAGGLGKASPSPVTPSGRPRGRPPRVKPELIETMLNNNN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02268 212 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Spst1g02268 212 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Spst1g02268 212 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Spst1g02268 212 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Spst1g02268 212 PANTHER HISTONE H1 25 201 - -
Spst1g02268 212 Gene3D - 37 112 IPR036388 -
Spst1g02268 212 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 41 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst1g02268 212 MobiDBLite consensus disorder prediction 110 124 - -
Spst1g02268 212 MobiDBLite consensus disorder prediction 105 212 - -
Spst1g02268 212 MobiDBLite consensus disorder prediction 125 152 - -
Spst1g02268 212 PRINTS High mobility group protein (HMGY) signature 114 126 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Spst1g02268 212 PRINTS High mobility group protein (HMGY) signature 151 170 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Spst1g02268 212 PRINTS High mobility group protein (HMGY) signature 138 149 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Spst1g02268 212 SMART h15plus2 39 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst1g02268 212 CDD H15 40 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst1g02268 212 PRINTS AT-hook-like domain signature 116 126 IPR017956 GO:0003677
Spst1g02268 212 PRINTS AT-hook-like domain signature 136 147 IPR017956 GO:0003677
Spst1g02268 212 PRINTS AT-hook-like domain signature 160 170 IPR017956 GO:0003677
Spst1g02268 212 FunFam HMG-Y-related protein A 37 119 - -
Spst1g02268 212 SUPERFAMILY "Winged helix" DNA-binding domain 40 123 IPR036390 -
Spst1g02268 212 Pfam linker histone H1 and H5 family 43 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02268 Spst-Chr1 31345680 31347773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02268 48 115 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 4.13e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02268 - - gmx:100803968 253.062