Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02253 ATGCGTGTGCACACTTCCCTGACAAATGTGAGCGGACGTATAATTCATCCCCCAGAATTGAAGATAGGTGATAGACGTGGTCAGATTATTAGTCTGCCACTGAGTCCAGCGAAAACTTGGTGGAATCTAAATGATAGATCAATGGTGGAAGGCAAGCCACTTAAGTGTTGGGGCATTCTTTTCTTTTATAAGCATGGTAAACAAAAATTTAAAAGCGAACAGTTCATTGAAAATCTTACTAAAAGGTATACAGCTTTGGGCATTGGCATGGAGAAGCCCGCTTCGTATGAAGAATATTGTATTTCGACACTTAGCAATTACGCTTCGCTGTTTGAATTACTTAAAAGAATTAATGGTCAGGTTCGAGAGAAATGTGGACAACGGCTGCAGTTCCTTCTTTGTGTGATGGGCGAAAAACATTCAGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAAGTTGGGATACTGACACAATGCTGCTTGTTTTCTCATGCTAATAAAGGGGCTGAGAATTTTCTTTCAAATCTTGTCCTCAAGATAAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATGAATAGGCTCCCAAACTTTGACGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTTAATCATCCAGCTTCCCGGGACATCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATAGCTATGCCACACGTGTTTGTGCTCAAGGTAATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCATGACCTAGTTTCATATTACAATAGGGTGAACAAAGTCTGGCCAGAAAAAATTGTTATCTTTCGTGATGGCGTGAGCGAAAGTCAATTTCATATGGTTCTCACGGAGGAGTTGCAAGATTTGAAATCAGTGTTTCGTGATTCAAATTACTTCCCAACCATCACTCTTATTGTTGCACAAAAGAGACATCAAACTCGATTTTTTGACAAGGAGCGATTATCAAATTTGAATCCTGGAACAGTTGTTGACACAGAAGTAGTACATCCTTTTGAATTTGACTTTTACCTCTGTAGTCACCATGGGACGTTGGGTACATGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAGTTTACATCTGATGATTTGCAAAAACTGATATACCATATGTGCTTTACCTTTGCAAGGTGCACTGGACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTTGCTGCATATAGAGGCCGGTTATACTATGAAGCAATGTATGAAATCCAACCTCCTGCCTCTTCCGCTACTGCATCTTCTTCCTCAGTTTCTACCCAAGGCTCAAGTTGTACTATGGGGAGGGGAGAGCTAGAGTAA 1380 0.4123 MRVHTSLTNVSGRIIHPPELKIGDRRGQIISLPLSPAKTWWNLNDRSMVEGKPLKCWGILFFYKHGKQKFKSEQFIENLTKRYTALGIGMEKPASYEEYCISTLSNYASLFELLKRINGQVREKCGQRLQFLLCVMGEKHSGYKCLKWIAETKVGILTQCCLFSHANKGAENFLSNLVLKINAKIGGSNVELMNRLPNFDGEGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANSYATRVCAQGNRVEKILNFGRICHDLVSYYNRVNKVWPEKIVIFRDGVSESQFHMVLTEELQDLKSVFRDSNYFPTITLIVAQKRHQTRFFDKERLSNLNPGTVVDTEVVHPFEFDFYLCSHHGTLGTCKPTHYHVLWDEHKFTSDDLQKLIYHMCFTFARCTGPVSLVPPVYYADLAAYRGRLYYEAMYEIQPPASSATASSSSVSTQGSSCTMGRGELE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02253 459 SMART Piwi_a_2 131 425 IPR003165 GO:0003676
Spst1g02253 459 Gene3D - 201 453 IPR036397 GO:0003676
Spst1g02253 459 Pfam Piwi domain 132 424 IPR003165 GO:0003676
Spst1g02253 459 Gene3D - 14 193 - -
Spst1g02253 459 ProSiteProfiles Piwi domain profile. 131 425 IPR003165 GO:0003676
Spst1g02253 459 MobiDBLite consensus disorder prediction 435 459 - -
Spst1g02253 459 SUPERFAMILY Ribonuclease H-like 119 425 IPR012337 -
Spst1g02253 459 MobiDBLite consensus disorder prediction 435 453 - -
Spst1g02253 459 CDD Piwi_ago-like 1 424 IPR045246 -
Spst1g02253 459 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02253 Spst-Chr1 31146963 31152747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02253 1 455 Eukaryotic Initiation Factors Gene Family AT1G48410 35.656 1.94e-89 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02253 K11593 - gmx:100805250 656.751