Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02252 ATGCATAGGCCTGACAAAGGGGGAAGGGATAAAGTTGAAACAAGGAATCTCGAGGTGAACCATTTCCTTGTTGAGTTTGACGAAGGCAGAGTAATCTTCCACTACGATGTCGACGTGAAGGCCAGGGGTACCCCCAGTTGGCCTCAGAAAATTTCAAAGTTATATCTGTCGTTGATTAGGAAGAAGCTATTTTCCGATCACAGGCTACCGAGTTCGGCGTACGACGGCGAAAGGAACATCTTCAGCTCGGAGCCGTTGCCTGCAGAAACCTATGATGTGGACGTGTTCATTGATGGAGACGAAAGGCTCGTTGGCTACTCGGTCACTTTCAGACTCGTGAAGGTGCTTGAACTCCACAAATTGAGAGATTACTTGAGGCTTGGATTTGGTAGTGAAAGAGAATCCAAGCAGCGGTGTGATTCGTTTGGGCGCTGCTTCTTCCCCATGCATAATCCTAGAACTCCGAGAGACGTGATAATTCCAACTGAAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAGGGCTTGTCCTTGTGCCTGGACTATTCCGTTTCGTCGTATGTTGGGAAGGATAAACCGGTGTTGGAGTTTCTGCTCGAACAGATTCCGAACTTAAATTTGAATCAGACCTCGACGTTCAAGAGCAAAGTTGAGACTCTACTTGTGGGGTTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAAAAATACACTATTACCAGGTTGACACGCAGGGCTACGAAGGATATCTCATTCCCTGCTTTGGACTCTGAGGGACGGTATACTGGATGGACACCTTCTCTGGATGGCTTCTTTTTACAGAAGTACGGCAAGAAGATTCAACACGTAGACCTTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCTATGGAGTTGTGTGTCTTGGTTAAGGATCAAAGATGCCCCAGAAAGAATTTATCGGACACAAATGCTGCCACAGAGTTGACACGTAAGGCAGTGATTCCTCCACCAATGAGGCGAGACAAAATAAGAGCTTTAGTAAAATCAAATGAAGGACCGTGTGGGTAA 1059 0.4674 MHRPDKGGRDKVETRNLEVNHFLVEFDEGRVIFHYDVDVKARGTPSWPQKISKLYLSLIRKKLFSDHRLPSSAYDGERNIFSSEPLPAETYDVDVFIDGDERLVGYSVTFRLVKVLELHKLRDYLRLGFGSERESKQRCDSFGRCFFPMHNPRTPRDVIIPTEGFQQSLKPTSQGLSLCLDYSVSSYVGKDKPVLEFLLEQIPNLNLNQTSTFKSKVETLLVGLKVNVTHRRTKQKYTITRLTRRATKDISFPALDSEGRYTGWTPSLDGFFLQKYGKKIQHVDLPALDFGGNKMNYVPMELCVLVKDQRCPRKNLSDTNAATELTRKAVIPPPMRRDKIRALVKSNEGPCG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02252 352 Gene3D paz domain 187 312 - -
Spst1g02252 352 CDD PAZ_argonaute_like 193 306 - -
Spst1g02252 352 ProSiteProfiles PAZ domain profile. 192 307 IPR003100 GO:0005515
Spst1g02252 352 SMART PAZ_2_a_3 192 324 IPR003100 GO:0005515
Spst1g02252 352 Pfam N-terminal domain of argonaute 16 132 IPR032474 -
Spst1g02252 352 Pfam Argonaute linker 1 domain 142 184 IPR014811 -
Spst1g02252 352 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 347 - -
Spst1g02252 352 Pfam PAZ domain 200 325 IPR003100 GO:0005515
Spst1g02252 352 SUPERFAMILY PAZ domain 190 346 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02252 Spst-Chr1 31145057 31146153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02252 3 310 Eukaryotic Initiation Factors Gene Family AT1G48410 28.818 3.72e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02252 K11593 - gmx:100805250 347.821