Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02246 ATGACATCGTTCTTGAAGCCTGAGAATGCTCTCAAAAGGGCGGAAGAGTTGATCAACGTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTCATTACCTCAAAGAGATATAGAGCATGGCAAAAGACACTTGAAAGGATTATGTTCAAGTATGTTGAACTTTGTGTGGACATGCGCAAAGGACGGTTTGCTAAAGATGGGCTTATTCAATACAGAATAATTTGTCAACAGGTCAATGTTAGTTCACTTGAAGAGGTTATTAAACACTTTATGCACCTCTCAACTGAGAAAGCTGAGCAAGCCCGTAGCCAAGCACAGGCATTAGAAGAAGCACTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCGGAGGATTTGATGTTGAGCTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGAGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAGACATACAGGACAGTGCTTGAGATATTGCGGAACAACTCAAAACTGGAAGCTTTATATGCTATGACAGCTCATCGAGCTTTTCAGTTCTGTAAGCAATATAAACGAACAACAGTGTTCCGCAGACCGTGTGAAATCATAAGAAACCATTTGGCTAATCTCAATAAATATCGTGACCAACGTGGCAGGCCTGATCTTTCAGCTCCTGAAAGCTTACACTTGTATCTTGATACTAGGGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTGTGGCAGGAAGCCTTTAGATTGGTGGAGGCTATACATGGACTGATGTGCTTGGTCAAGAAAACGCCTAAGCCATCTTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTGTATCATGCATATGCATGGTTCAGGCTTTTTTTATTGCAGAAAAGCTTCAACAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCTGTTGTTCTAGCTGCACTTTCAGTGCCTCCTCATGATCGTACCTATGGCGCATCCCATTTGGAACTGGAGCACGAAAAAGAGAGAAATTTGAGGATGGCTAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAGAGAAATGCTGTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGAGTGATGTCTTGTGTAACTCAGGAAGTGAAAGACATTTACCATCTTTTGGAACATGAATTTTATCCCTCAGATCTTGCATTAAAAGCACAGCACATGATAACTAAGATCTCTAAGTTAGGGGGCAAGCTTTCTACTGCTTCTTCTGTTCCAGATGTACAATTGTCTCAGTATGTCCCAGCACTGGAAAGACTTGCCACCATGAGGTTGCTGCAGCAGGTGTCCAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGGATGATCCCGTTTTTTGACTTTTCTGTAGTGGAAAAGATTTCTGTAGATGCTGTAAAGCAGAAGTTTGTATCAATGAGAGTTGATCGTATGAAAAATGTTGTGATTTTTTGCAAAACGAGTCTTGAGTCTGATGGCTTAAGAGATCACTTGGCCAATTTTGCTGAACAATTAAATAAGGCCAGACAAATGATTTATCCTCCTGATAGGAAACCATCAAAACTTGGAGCTTTACTTCCAACACTGACAGAGGTTGTTGCCAAAGAACACAAGAGGCTTCTTGCCCGAAAATCAATTATTGAGAAGAGAAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAAAGGGAGGAGTCAAAAAGATTAAGACTACAGAAAATAACTGAAGAAGCTGAGCAAAGACGGCTTGCTACTGAGTATGAGCAGAGAAAGAATCAGAGGATCCTCAGGGAGATAGAGGAGAGAGAAATTGAAGAGGCTCAAGCGTTACTCCAGGAAGCTGAAAAGCGAATTAAAAAGAAGGGGAAAAAACTGATTATAGAGGGAGACAAAATCACCAAGCAGACGATGATGGAGTTGACTTTGACCGAACAACTCCGGGAAAGGCAAGAAATGGAAAAAAAACTGCAGAAGCTTGCCAAAACCATGGATTATTTGGAAAGAGCAAAAAGAGAAGAGGCTGCTCCTCTTATTGAAGCTGCATATCAACAGCGTCTAGTGGAAGAGAGGCTTCTTCATGAGCGTGAACAACAGCAAGAGGTTGAACTGAGCAAACATAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGCACGAATGATGGGCAATAAGGAGATATATGAGGTCAGAGTTGTTAGTCATCGCCAAGCAGAGTTTAACAGATTGAAAAGAGAACGGGAAGAGCGAATCTCTAGGATTTTACAGTCCAGGAGACAGGAGAGGGAAAAAATGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAAGAAAGACAACAAAAATTGCGCGAGGAGGAGGAAGCACGGAAACTTGAAGAGGCTGAAAGGAGAAAGAAGGAAGAGGTTGAACGCTTAGCAAAACTGGCCGAGATAGCCGAAAAGCAGAAGCAGAGAGAGAGAGAACTTGATGAGAAGGAGAGACAGAGGAGAGAAGCCTTGTTGGGCAGAGCTGCTGAACCAGCTCCTCCTGTTCGGCCATTGGAATCTGTAACAGCCGCTCCTGCTGCAGCTGCAGCTGCTCCAACTCCTGGAAAATACATCCTCCCTAAATTCAGGCGAGAGAGAGCTGAAAGCACAGGAACTGCCCCTCGAACAGGAGCTGCCCCTCCTCCCGATACAGACCGCTGGGGTAACAGTAGTTCCCGGCCTGATGGTGACAGATGGCGACAGGTGGCGTGGTGA 2814 0.4325 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTVFRRPCEIIRNHLANLNKYRDQRGRPDLSAPESLHLYLDTRVEQLKIATELELWQEAFRLVEAIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTYGASHLELEHEKERNLRMANLIGFNLETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFYPSDLALKAQHMITKISKLGGKLSTASSVPDVQLSQYVPALERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMRVDRMKNVVIFCKTSLESDGLRDHLANFAEQLNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKLIIEGDKITKQTMMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKHRHEGDLKEKERLARMMGNKEIYEVRVVSHRQAEFNRLKREREERISRILQSRRQEREKMRKLKYYLKLEEERQQKLREEEEARKLEEAERRKKEEVERLAKLAEIAEKQKQRERELDEKERQRREALLGRAAEPAPPVRPLESVTAAPAAAAAAPTPGKYILPKFRRERAESTGTAPRTGAAPPPDTDRWGNSSSRPDGDRWRQVAW 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02246 937 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 932 IPR027512 GO:0005852
Spst1g02246 937 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Spst1g02246 937 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Spst1g02246 937 Gene3D - 352 497 - -
Spst1g02246 937 Gene3D - 269 342 - -
Spst1g02246 937 Gene3D UVR domain 218 268 - -
Spst1g02246 937 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Spst1g02246 937 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Spst1g02246 937 Coils Coil 666 696 - -
Spst1g02246 937 Coils Coil 561 605 - -
Spst1g02246 937 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Spst1g02246 937 Coils Coil 93 120 - -
Spst1g02246 937 Pfam PCI domain 373 508 IPR000717 -
Spst1g02246 937 Coils Coil 614 648 - -
Spst1g02246 937 MobiDBLite consensus disorder prediction 806 858 - -
Spst1g02246 937 MobiDBLite consensus disorder prediction 806 937 - -
Spst1g02246 937 Coils Coil 795 855 - -
Spst1g02246 937 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 933 IPR027512 GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02246 Spst-Chr1 30996229 31002202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02246 1 932 Eukaryotic Initiation Factors Gene Family AT4G11420 72.122 0.0 1286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02246 K03254 - gmx:100782598 1489.17