LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02245	ATGTTCAAGTATGTTGTGGACATGCAAAAAGGACGGTTTGCTAAAGATGGGCTCATTCAGTACCGGATAATATGTCAGCAAGTGAATGTTAGTTCATTGGAGGAGGTTATTAAACACTTTGTGCACCTTTCAACTGAGAAAGCTGAACAAGCCCTTCATCGAGCTTTTCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTTTGCAGACTATGTGAAATCATAAGAAACCATTTGGCTAATCTCAATAAATACTGCGACCAACATGACAGGCCTGATCTTTCAGCTCCTGAAAGGTTACAATTCTATCTTGATACTAGGGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTTTGGCAGGAAGCCTTTAGATCAGTGGAGGATATCCATGGACTGATGTGCTTGGTCAAGAAAACGCCTAAGCCATCTTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGCTTCAATAAAAATCTGAGTCAAAAGGATTTGCAATTAATAGCATCATCTGTTATTCTAACTGCACTGTTAGTGCCTCCTCATGATCGTACCTATGGTGCATCCCATTTGGAACTGGAGCCCAAAAAAGAGAGAAATTTGAGGATGGATAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAAAGAAAAGACTCCTCTAAATCTTGTATCTGCCATGAAAGGTAGCCGAGAGAAACATGGGGGACCACACGCGAAACTGCATGTGAAATGGGCGCATGATGTGTATGATCCAATACCTACATTATTATCACACACTGTCAAAAGCAACAAGAAGCAACGAAAATCCAGGAAGAAGAAACCTGAAAAGAAGAATGGAAAGAAGGGTAAAAAGGGAAATTCATCTCAAGGGGACAACAACAAAGATCAACAGTTTCGCAAGCTAGGTGGAATTTCTGGTTTGTGCTACAAGTCGATGGATTCTTGTGATCCAGTGCTTGTAGCTTCTTCTGAATTAGATGCTCTTGATGTTCTTAACCAGGATTGGTATTGTGGAACTAGCTTCTTGAAAAAATCAGTTACAGAAGTGCACTATTCAGTTGCAGAAGCGTTATGA	1155	0.3948	MFKYVVDMQKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFVHLSTEKAEQALHRAFQFCKQYKRTTEFCRLCEIIRNHLANLNKYCDQHDRPDLSAPERLQFYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVILTALLVPPHDRTYGASHLELEPKKERNLRMDNLIGFNLETKPESKEKTPLNLVSAMKGSREKHGGPHAKLHVKWAHDVYDPIPTLLSHTVKSNKKQRKSRKKKPEKKNGKKGKKGNSSQGDNNKDQQFRKLGGISGLCYKSMDSCDPVLVASSELDALDVLNQDWYCGTSFLKKSVTEVHYSVAEAL	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g02245	384	MobiDBLite	consensus disorder prediction	282	324	-	-
	Spst1g02245	384	FunFam	Eukaryotic translation initiation factor 3 subunit A	141	215	-	-
	Spst1g02245	384	FunFam	Eukaryotic translation initiation factor 3 subunit A	89	141	-	-
	Spst1g02245	384	Gene3D	-	142	213	-	-
	Spst1g02245	384	MobiDBLite	consensus disorder prediction	288	307	-	-
	Spst1g02245	384	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	51	IPR027512	GO:0005852
	Spst1g02245	384	Gene3D	UVR domain	90	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02245	Spst-Chr1	30990734	30993331	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02245	1	55	Eukaryotic Initiation Factors Gene Family	AT4G11420	75.862	1.34e-21	95.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02245	K03254		-	gmx:100803796	353.599