Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02241 ATGGCACTGGCCAAAGACCAAAAAATTCCACATGATTCAAGCATGAGCAGCAAGGTTCAAAACTGTTTTTTTAGTGAGGCTAGCGTGGAGACTACCTCCATGACTGTTCATAGAGTCAATGAGTACCACAAATCAGTGTTAGCAGAGGAAGATGGTCTCGGCAATGATTCAGCTGTAACACATTCTCCTCCTCTATGTGGCAGTGGCAAAGGATATGCTTATAAGGGCACGAACTATCAGCTTGAAGAAGAAGAATCTCTGATTAATTTCAAAGGGTACAGCAATCTCATGCAAACTGATGAATCATTGCTTAGCTTTCAGCACAACAGGGATACTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGCCATAACCACTGGAATGAGACTAGTCCAAGAAGCACTAAAAACATGCGTCTGGTGCAGGATTTCAATTGCTTTCATACTGCTAGTGGCTATAGCTCCATATTCAATAATGCAAACGAGAAGCAACATGTTCAAAGTTCATCAGGGTGGCTCTACTCAGCACCATCTATCCCGAATGATAGGAGCCTCCACAAGTTAGGAGCACCAGAGACAGTTTTGCAAAAGCGCCCTTCAATGGGACAGAACATGAAAGCTGCGAAGAAGCAATGTTCAACTGAGAGCAAAACGCCAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGCGAGCGATTGAAGATACTACAAGAACTAGTGCCTAATGGCTCCAAGGTTGATATGGTTACTATGCTGGAGAAAGCAATTAGCTATGTAAAGTTTCTTCAACTTCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTTCAGGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCTATCATCACAAAGAGAGAGAAGTTCAAGCTCAAAGTAG 972 0.428 MALAKDQKIPHDSSMSSKVQNCFFSEASVETTSMTVHRVNEYHKSVLAEEDGLGNDSAVTHSPPLCGSGKGYAYKGTNYQLEEEESLINFKGYSNLMQTDESLLSFQHNRDTSQKEYCVWENNLHQGHNHWNETSPRSTKNMRLVQDFNCFHTASGYSSIFNNANEKQHVQSSSGWLYSAPSIPNDRSLHKLGAPETVLQKRPSMGQNMKAAKKQCSTESKTPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDAILSSQRERSSSSK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02241 323 SMART finulus 235 284 IPR011598 GO:0046983
Spst1g02241 323 FunFam Transcription factor bHLH83 227 286 - -
Spst1g02241 323 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Spst1g02241 323 Gene3D - 224 286 IPR036638 GO:0046983
Spst1g02241 323 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 92 287 IPR045843 GO:0003700|GO:0006355
Spst1g02241 323 MobiDBLite consensus disorder prediction 198 242 - -
Spst1g02241 323 CDD bHLH_AtIND_like 230 292 - -
Spst1g02241 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Spst1g02241 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 288 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02241 Spst-Chr1 30888218 30889745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02241 70 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.211 1.25e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g02241 HLH 7.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02241 - - gmx:100810010 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02241 1 30888218 30889745 Spst1g02241 1 30888218 30889745 ECH
Spst8g00300 8 2655141 2656574 Spst1g02241 1 30888218 30889745 PCT