Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02240 ATGGAGAGTCCCCATTCGCTCTCTCCATCTTCCTCCTCCTCTTATTCCTCCGACGGCCTCACTTTCGACACGGAGGAGCCACGGACGCCGCTCGCCGTGCGCCGCGCCCTGCACCTCCTCAACTCCGGCGAGCCTCACCTCTGCCTTCAAGCCGCTCGCGACATCCGTCGACTCACCAAGACGTCCCAACGTTGTCGGCGCCAGCTGTCCCAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAATCCGCTCTCCTCGCCTTGCTTAACCTCGCCGTTAAAGACGAAAAGAATAAAATCAATATTGTGGAGGCTGGGGCATTAGAACCGATAATTAGTTTCCTCAAGTCTCAAAATCAAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAATAAACCAATTATAAGTGCTTGTGGCGCCATTCCTCTTCTTGTGGAGATCCTTGGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACACTACTAATCTGAGCACCATTCTTGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAATCCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAAGAAGGCGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCAATTCTAAGAGAAGGTGTGATTCCAGGACTTCTCGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCCCCTTATCCGAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGATGGGGATGATCAATCTGGTAAAGCTAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGACATTTACAACAAAGGGCTCTCGTGTGCACCCCAAGTGATCTTCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4845 MESPHSLSPSSSSSYSSDGLTFDTEEPRTPLAVRRALHLLNSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNQNLQESATASLLTLSASSTNKPIISACGAIPLLVEILGDGSPQAKADAVMALSNLSTHTTNLSTILETNPIPFIVDLLKSCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02240 387 MobiDBLite consensus disorder prediction 1 26 - -
Spst1g02240 387 Gene3D - 20 370 IPR011989 -
Spst1g02240 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Spst1g02240 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Spst1g02240 387 PANTHER U BOX DOMAIN-CONTAINING 19 315 - -
Spst1g02240 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Spst1g02240 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Spst1g02240 387 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g02240 387 SMART arm_5 102 142 IPR000225 GO:0005515
Spst1g02240 387 SMART arm_5 184 226 IPR000225 GO:0005515
Spst1g02240 387 SMART arm_5 61 100 IPR000225 GO:0005515
Spst1g02240 387 SMART arm_5 228 268 IPR000225 GO:0005515
Spst1g02240 387 SMART arm_5 143 183 IPR000225 GO:0005515
Spst1g02240 387 FunFam U-box domain-containing protein 4 18 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02240 Spst-Chr1 30859671 30863235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02240 50 310 U-box Gene Family AT2G23140 35.361 9.18e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02240 - - gmx:100780954 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02240 1 30859671 30863235 Spst1g02240 1 30859671 30863235 ECH
Spst8g00299 8 2639484 2642889 Spst1g02240 1 30859671 30863235 PCT