Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02234 ATGAGAAAACCTTGTTGTGACAAAGAAGGCACAAACAAAGGTGCTTGGTCCAAGCAAGAGGACCAAATGCTTATTGATTACATCCAAGCTCATGGTGCTGGACGATGGTGTTCCCTTCCCAAGGCTGCAGGACTTCATCGTTGTGGCAAAAGCTGCAGGTTGCGATGGATAAACTATTTGAGACCAAACATTAAACGTGGCAACTTTGGCCAGGACGAAGAAGAACTCATAATCAAATTGCACGCTCTTCTTGGCAACCGGTGGTCACTGATTGCTGGAAGGTTACCGGGACGTACAGATAACGAGGTGAAGAACTATTGGAATTCTAACATTCGAAGAAAGCTGATTAAGATGGGAATTGATCCCAATAACCACAAGCTTCACCAAAGCTTCCCTCTTCAACATGCTTCTTCCCATGTTTCAGTATCCACTACCACTGCACAATCATGTGGAGTCCCTTTCATCAAATCCCATGGTTCTACCAATCATAGGATTTCGGACACACATAGCTCTCTTGTACAAGAAACTTCCCACTTAAATCTTGACCTAACCATTGCTTTCCCTTCACCTACACATGCTCTTCTGCAAGACAAATCTAATAAACCTATTTCTCACGGCACCAACTCAAGGAACATTCATCAGGATTCTGCTCCTGCCGGCTTTCTTCTCTTTCTATAA 678 0.4381 MRKPCCDKEGTNKGAWSKQEDQMLIDYIQAHGAGRWCSLPKAAGLHRCGKSCRLRWINYLRPNIKRGNFGQDEEELIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSNIRRKLIKMGIDPNNHKLHQSFPLQHASSHVSVSTTTAQSCGVPFIKSHGSTNHRISDTHSSLVQETSHLNLDLTIAFPSPTHALLQDKSNKPISHGTNSRNIHQDSAPAGFLLFL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02234 225 SMART sant 65 113 IPR001005 -
Spst1g02234 225 SMART sant 12 62 IPR001005 -
Spst1g02234 225 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Spst1g02234 225 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst1g02234 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 168 - -
Spst1g02234 225 CDD SANT 68 111 IPR001005 -
Spst1g02234 225 Gene3D - 13 65 - -
Spst1g02234 225 Gene3D - 67 137 - -
Spst1g02234 225 CDD SANT 15 60 IPR001005 -
Spst1g02234 225 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Spst1g02234 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Spst1g02234 225 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst1g02234 225 FunFam MYB transcription factor 67 128 - -
Spst1g02234 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Spst1g02234 225 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Spst1g02234 225 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02234 Spst-Chr1 30801283 30802314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02234 2 194 MYB Transcription Factor Family AT4G38620 52.607 5.33e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02234 Myb_DNA-binding 9.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02234 K09422 - gmx:100793444 283.493