Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02233 ATGCTGTTAAAGCATTCGTTGCTAACGCATAGATCCAACTTCAGATTTTCCCGAGAAACTCGCATTTTCCGGGGAAGAAACTCCACGAATTCCTACATGGCGCCTCCAATCCTCTCCATCGCCCTTCCCTCCGACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGCAATAAATCAGCTGTCTTCCCCCTGCAACTACTGGGCTACGATGTGGATCCAATTAATTCCGTGCAGTTTTCAAACCATACAGGATATCCGTCGTTTAAGGGCCAGGTTTTGAATGGACAGCAACTCTGGGAGCTAATAGAAGGCCTTGAAGGAAATGAATTGTTGTTCTATACTCACTTGTTAACAGGTTATATCGGTTCAGAGTCTTTTCTAAACACTGTATTGCAGGTCGTCAACAAACTTCGGTCAATAAACCCAGGGCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCCAAAGAGCTAGTCTCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACCCCCAACCAGTTTGAGGCAGAACTACTGACAGGTTTCAGGATTCAGTCAGAAGAACATGGTCGAGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATTGACGGGAATCTTCTTCTCATTGGCAGTCATCAAAAAGAAAAGGGAACAGGAGATCTCATGACTGCACTTCTTCTTGCAGTGCGTCGTGACTGGCTCCAAAAACGCTATAGGGAGATAGCAAATAACAGCAGCTCAGCCATCATGCCCGCCATTCAACCCGTCTTTGGGTCTGCTACATTAAACTGTTCCGCAACAGCAGCTCCTGTAGCGGGCAGGACACCCTATGAGACAATCTTGAGGTTGCAGCAGAACTTGCAGTTTCAAGCTTGCAGTTTTGGATTAGTAAACTATCATTCAGATAATGAACAGATCAAGGTTCACCAATATGTGCAGGCAGTTTTGCACAGGACGCTCAGTGACTACAAAAGCGCGGGACATGATTCCGAGTCAACCAGTTTAGAGATCAGATTAATTCAAATTCTCCTCTCTCTTGCTGTGATCATGGGTTGCTGCTTTAGTGCTCCTCCAAAGATCAAAGCCGAGAGCCCTCCACGTAATGGTTTGAATTCATGGGATGGTTGCAAAGAAGATAATGATTTGAGTGGTTTAAGCGGCAAGGTGTCTTCATCTATGCTTGTAACTCCTCAGAGTGAGGTTGAGATATTGGAGGCCAGCAATTTGAAGAACTTCGCATTCAATGAGCTAAGAACTGCTACCAGGAACTTTCGTCCAGATAGTTTGGTGGGTGAAGGTGGCTTTGGTTGCGTGTTTAAAGGGTGGATTGATGAGCAGACACTTGCCCCTACTAAAGCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACACTGAATGGTTGACAGAAATTAACTACCTGGGACAGCTGAGTCATCCTAATCTTGTGAAGCTAATTGGTTACTCCTTAGAGGATGATCACCGGATTCTGGTGTATGAATTTGTGGCCAAGGGTAGCTTGGATAATCACCTGTTTAGGAGGGCTTCTTACATTCAACCACTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATGCCGCTAAAGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATATAGGGACTTCAAAACTTCTAATATCTTACTTGATTCTAATTATAACGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGATAAGAGCCATGTTTCTACAAGGGTAATGGGCACCTTCGGCTACGCAGCTCCTGAGTATATTGCCACAGGTCACCTAACCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTTATGTCAGGAAAACGTGCACTGGATAACAACAGGCCAAATGGGGAACATAATTTAGTTGAATGGGCCAAACCACTCCTCATAAACAAACACAAGATCTCCCAAGTCATGGATGCACGCATAGAAGGCCAATATTCAAAGCAAGAAGCAAAGAGAATAGCTCACATTGCAATTCAATGCTTATCGACAGAACAAAAAGTTAGACCAAACATAGATTATGTGGTGAGATCATTGGAACATCTTCAGGACTCCATTGACACACAAGTAAATGGCCATTGCTCAAGCAGCAGTGGTACTCCTAATCCAAGTTTGTCTCCTTCTCCTCTTCGTACATAG 2298 0.4413 MLLKHSLLTHRSNFRFSRETRIFRGRNSTNSYMAPPILSIALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPSFKGQVLNGQQLWELIEGLEGNELLFYTHLLTGYIGSESFLNTVLQVVNKLRSINPGLTYVCDPVMGDEGKLYVPKELVSVYREKVVPVASMLTPNQFEAELLTGFRIQSEEHGREACRLLHAAGPSKVIITSINIDGNLLLIGSHQKEKGTGDLMTALLLAVRRDWLQKRYREIANNSSSAIMPAIQPVFGSATLNCSATAAPVAGRTPYETILRLQQNLQFQACSFGLVNYHSDNEQIKVHQYVQAVLHRTLSDYKSAGHDSESTSLEIRLIQILLSLAVIMGCCFSAPPKIKAESPPRNGLNSWDGCKEDNDLSGLSGKVSSSMLVTPQSEVEILEASNLKNFAFNELRTATRNFRPDSLVGEGGFGCVFKGWIDEQTLAPTKAGTGMVIAVKRLNQESNQGHTEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIQPLSWNIRMKIALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRALDNNRPNGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKQEAKRIAHIAIQCLSTEQKVRPNIDYVVRSLEHLQDSIDTQVNGHCSSSSGTPNPSLSPSPLRT 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02233 765 Gene3D Phosphorylase Kinase; domain 1 425 535 - -
Spst1g02233 765 CDD STKc_IRAK 456 735 - -
Spst1g02233 765 PANTHER OS01G0588500 PROTEIN-RELATED 409 736 - -
Spst1g02233 765 ProSiteProfiles Protein kinase domain profile. 450 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02233 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Spst1g02233 765 CDD pyridoxal_pyridoxamine_kinase 48 254 IPR004625 GO:0008478|GO:0009443
Spst1g02233 765 Gene3D Transferase(Phosphotransferase) domain 1 536 750 - -
Spst1g02233 765 MobiDBLite consensus disorder prediction 742 765 - -
Spst1g02233 765 ProSitePatterns Protein kinases ATP-binding region signature. 456 488 IPR017441 GO:0005524
Spst1g02233 765 NCBIfam pyridoxal kinase 48 227 IPR004625 GO:0008478|GO:0009443
Spst1g02233 765 FunFam Serine/threonine-protein kinase PBS1 536 750 - -
Spst1g02233 765 Gene3D - 44 374 IPR029056 -
Spst1g02233 765 SUPERFAMILY Ribokinase-like 47 255 IPR029056 -
Spst1g02233 765 Pfam Protein tyrosine and serine/threonine kinase 455 732 IPR001245 GO:0004672|GO:0006468
Spst1g02233 765 FunFam Serine/threonine-protein kinase BIK1 417 535 - -
Spst1g02233 765 Pfam Phosphomethylpyrimidine kinase 124 228 IPR013749 -
Spst1g02233 765 SUPERFAMILY Protein kinase-like (PK-like) 432 734 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02233 Spst-Chr1 30783219 30798491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02233 436 744 Glycoside Hydrolase AT3G07070 48.232 1.66e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst1g02233 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02233 - - var:108326804 699.893