Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02232 ATGGCAATTGGGTTCATGGAGGTGCAGCTTCTGAAAGCAAAGGGGTTGTGTGACACTGATATCTTTGGTCGCATGGACCCCTATGCTGTGATACAATACAACGGTGAAGAGCAAAGGAGTAGTGTTGCTAAGGGACAAGGCAGAAATCCTGCATGGAATGAGAAATTTGTGTTCAAGGTTCAATATCCTACCCAATCTAAATCTTACAAGATCTTCTTGAGAATCATGGACAAGGACTTTTTATCTGCAGATGACTTCGTTGGTCAAGCCATAGTTTACGTGGAAGATGTATTAGCCATAGGGGTAGAGAAAGGTGCAGCTGAGCTAAAACCTACCAAGTTTAGAGTAATTCGTGCAGACCAATCTTATTGTGGAGAAATTGACGTTGGTGTATCTTTTAAGATTAAAAAACAATTTTATAATCAATTAAGCCGTCTTAGCTCAGTGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATCCCCACAGACGGCGAATAA 507 0.4241 MAIGFMEVQLLKAKGLCDTDIFGRMDPYAVIQYNGEEQRSSVAKGQGRNPAWNEKFVFKVQYPTQSKSYKIFLRIMDKDFLSADDFVGQAIVYVEDVLAIGVEKGAAELKPTKFRVIRADQSYCGEIDVGVSFKIKKQFYNQLSRLSSVVERVAFNHVVVGSIPTDGE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02232 168 SMART C2_3c 5 106 IPR000008 -
Spst1g02232 168 Pfam C2 domain 6 99 IPR000008 -
Spst1g02232 168 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Spst1g02232 168 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Spst1g02232 168 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Spst1g02232 168 Gene3D C2 domain 2 134 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02232 Spst-Chr1 30778103 30780316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02232 3 109 C2H2 Transcription Factor Family AT4G21160 28.037 1.36e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02232 - - gmx:100526962 239.965