Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02216 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCAGAGAGGCGAGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTGTTCATGATACTGAACTCTCATCAGATGTCCCCAAATTTTCTTCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCGACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACTGAACTGAGGTTGCATATGCCACCATCGATCGCACTTGCAAGTCGAGGGCGTCTGCAGGGCCTCAGACTTCAGCTTGCACTTCTTGACAGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTGGATTCTGATAATGTTTCAACTGCACCTTCTATGACTGAGGAAGAGATAAATGCACTTCCAGTTCACAAATACAAGGTCGCTGGTCCCCAGAGTGGTGGTTCCTCAACACAACAAGCATCATCTTCCACTTCTGCTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGACGATGAGCTCACTTGTAGTGTATGCTTGGAACAAGTCAATGTTGGTGAAGTGCTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAATTGCATTGATCCTTGGCTGCGCCAACAAGGAACATGCCCTGTTTGCAAATTTCGAGCAGGATCTGGATGGAGTGACAATGGACATAACGATATCGCGGACATGGTTTGA 822 0.4562 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSTQQASSSTSAEKKQDNSNAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02216 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Spst1g02216 273 MobiDBLite consensus disorder prediction 175 204 - -
Spst1g02216 273 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Spst1g02216 273 SMART ring_2 213 253 IPR001841 -
Spst1g02216 273 CDD RING-H2_PA-TM-RING 212 254 - -
Spst1g02216 273 SUPERFAMILY RING/U-box 208 257 - -
Spst1g02216 273 Pfam Ring finger domain 212 254 IPR001841 -
Spst1g02216 273 MobiDBLite consensus disorder prediction 173 204 - -
Spst1g02216 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 259 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02216 Spst-Chr1 30548276 30551266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02216 1 273 C3H Transcription Factor Family AT3G55530 78.623 4.40e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02216 K16283 - gmx:100777936 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02216 1 30548276 30551266 Spst1g02216 1 30548276 30551266 ECH