Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02216 | ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCAGAGAGGCGAGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTGTTCATGATACTGAACTCTCATCAGATGTCCCCAAATTTTCTTCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCGACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACTGAACTGAGGTTGCATATGCCACCATCGATCGCACTTGCAAGTCGAGGGCGTCTGCAGGGCCTCAGACTTCAGCTTGCACTTCTTGACAGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTGGATTCTGATAATGTTTCAACTGCACCTTCTATGACTGAGGAAGAGATAAATGCACTTCCAGTTCACAAATACAAGGTCGCTGGTCCCCAGAGTGGTGGTTCCTCAACACAACAAGCATCATCTTCCACTTCTGCTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGACGATGAGCTCACTTGTAGTGTATGCTTGGAACAAGTCAATGTTGGTGAAGTGCTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAATTGCATTGATCCTTGGCTGCGCCAACAAGGAACATGCCCTGTTTGCAAATTTCGAGCAGGATCTGGATGGAGTGACAATGGACATAACGATATCGCGGACATGGTTTGA | 822 | 0.4562 | MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSTQQASSSTSAEKKQDNSNAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02216 | 273 | ProSiteProfiles | Zinc finger RING-type profile. | 213 | 254 | IPR001841 | - | |
Spst1g02216 | 273 | MobiDBLite | consensus disorder prediction | 175 | 204 | - | - | |
Spst1g02216 | 273 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 260 | - | - | |
Spst1g02216 | 273 | SMART | ring_2 | 213 | 253 | IPR001841 | - | |
Spst1g02216 | 273 | CDD | RING-H2_PA-TM-RING | 212 | 254 | - | - | |
Spst1g02216 | 273 | SUPERFAMILY | RING/U-box | 208 | 257 | - | - | |
Spst1g02216 | 273 | Pfam | Ring finger domain | 212 | 254 | IPR001841 | - | |
Spst1g02216 | 273 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - | |
Spst1g02216 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 259 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02216 | Spst-Chr1 | 30548276 | 30551266 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02216 | 1 | 273 | C3H Transcription Factor Family | AT3G55530 | 78.623 | 4.40e-149 | 416 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02216 | K16283 | - | gmx:100777936 | 455.677 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02216 | 1 | 30548276 | 30551266 | Spst1g02216 | 1 | 30548276 | 30551266 | ECH |