Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02214 ATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGGTGTAGCCGCTTCGTCCGTGTCTTACGCCACGACGCCGTTGTCTGCCCCGATTGCGACGGCGGATTCATCGAAGAAATCGAACATCCGCCGCGCTCCGTCCACCTAGACCCCCGCCGACGCCGCTTCCCTCCGGCCGCCATGTACATGATCGGCCAACGCCCCGCATCCGATAACGCAGGCCGCCCCGCCCTACGCCGCACCCGTCGCAACGGCGGTGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGGACCGCCGCCTCGGCCGCTACCGCCACCGCCGAGGATGAAAGTCGAGGCTTTGAACTCTTCTACGATGACGGTGCTGGTTCTGGCCTCAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTTCTCGGATCTGGATTCGATAGGCTTCTTGAGCAACTTTCTCAGATTGAGATCAATGGTATTGGGAGGTACGAGCACCCTCCTGCGTCAAAAGCAGCCATTGATTCGTTACCAACCATTGAAATCGATGATACTCACTTAGCCATGGAATCGCACTGCGCGGTTTGCAAGGAAGCTTTTGAATTAGGCACCGCCGTAAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTCGCACTGCACAATTCTTGCCCCGTTTGTCGCCACGAGTTACCTGCGGATTCCCCAAACGCAAATTCAAATACAAATCCAAATGCAAATTCAAACTCAAATCCACGTGAAAACGTAGGGTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTAGGGAGATTCTCGGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTACACTGAAATGGATGGAGGATTTAACAATGGAGGTGAGCCGAGGAGGATTTCATGGTCTTCGAGAGGGAATAGAGGGAGAGAGATTGGGGGGTTTAACCGTTTTTTTCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGAAAGTAGTGGTGCCAGTACTACACAGCGTTCTGCTTCTAGCAGAGAGTCTATGAGAGCGAGTTCTTCTCGTTCTAGTATGGATCCTTCTCCGCGATCACGCAGGACATGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1185 0.5418 MMSSGTSSYWCYRCSRFVRVLRHDAVVCPDCDGGFIEEIEHPPRSVHLDPRRRRFPPAAMYMIGQRPASDNAGRPALRRTRRNGGDRSPFNPVIVLRGGTAASAATATAEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSPNANSNTNPNANSNSNPRENVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGREIGGFNRFFRNLFGCFRGGVESSGASTTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02214 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
Spst1g02214 394 SMART ring_2 191 231 IPR001841 -
Spst1g02214 394 MobiDBLite consensus disorder prediction 66 90 - -
Spst1g02214 394 CDD RING-H2_RNF126-like 191 232 - -
Spst1g02214 394 MobiDBLite consensus disorder prediction 239 261 - -
Spst1g02214 394 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Spst1g02214 394 Pfam Protein of unknown function (DUF1117) 268 373 IPR010543 -
Spst1g02214 394 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Spst1g02214 394 Pfam Ring finger domain 190 232 IPR001841 -
Spst1g02214 394 MobiDBLite consensus disorder prediction 346 394 - -
Spst1g02214 394 MobiDBLite consensus disorder prediction 347 386 - -
Spst1g02214 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 236 - -
Spst1g02214 394 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Spst1g02214 394 SUPERFAMILY RING/U-box 171 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02214 Spst-Chr1 30527525 30528709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02214 130 241 C3H Transcription Factor Family AT5G01980 41.071 4.72e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02214 K11982 - gmx:100807324 627.091