Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02214 | ATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGGTGTAGCCGCTTCGTCCGTGTCTTACGCCACGACGCCGTTGTCTGCCCCGATTGCGACGGCGGATTCATCGAAGAAATCGAACATCCGCCGCGCTCCGTCCACCTAGACCCCCGCCGACGCCGCTTCCCTCCGGCCGCCATGTACATGATCGGCCAACGCCCCGCATCCGATAACGCAGGCCGCCCCGCCCTACGCCGCACCCGTCGCAACGGCGGTGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGGACCGCCGCCTCGGCCGCTACCGCCACCGCCGAGGATGAAAGTCGAGGCTTTGAACTCTTCTACGATGACGGTGCTGGTTCTGGCCTCAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTTCTCGGATCTGGATTCGATAGGCTTCTTGAGCAACTTTCTCAGATTGAGATCAATGGTATTGGGAGGTACGAGCACCCTCCTGCGTCAAAAGCAGCCATTGATTCGTTACCAACCATTGAAATCGATGATACTCACTTAGCCATGGAATCGCACTGCGCGGTTTGCAAGGAAGCTTTTGAATTAGGCACCGCCGTAAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTCGCACTGCACAATTCTTGCCCCGTTTGTCGCCACGAGTTACCTGCGGATTCCCCAAACGCAAATTCAAATACAAATCCAAATGCAAATTCAAACTCAAATCCACGTGAAAACGTAGGGTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTAGGGAGATTCTCGGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTACACTGAAATGGATGGAGGATTTAACAATGGAGGTGAGCCGAGGAGGATTTCATGGTCTTCGAGAGGGAATAGAGGGAGAGAGATTGGGGGGTTTAACCGTTTTTTTCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGAAAGTAGTGGTGCCAGTACTACACAGCGTTCTGCTTCTAGCAGAGAGTCTATGAGAGCGAGTTCTTCTCGTTCTAGTATGGATCCTTCTCCGCGATCACGCAGGACATGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG | 1185 | 0.5418 | MMSSGTSSYWCYRCSRFVRVLRHDAVVCPDCDGGFIEEIEHPPRSVHLDPRRRRFPPAAMYMIGQRPASDNAGRPALRRTRRNGGDRSPFNPVIVLRGGTAASAATATAEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSPNANSNTNPNANSNSNPRENVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGREIGGFNRFFRNLFGCFRGGVESSGASTTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW | 394 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02214 | 394 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 238 | IPR013083 | - | |
Spst1g02214 | 394 | SMART | ring_2 | 191 | 231 | IPR001841 | - | |
Spst1g02214 | 394 | MobiDBLite | consensus disorder prediction | 66 | 90 | - | - | |
Spst1g02214 | 394 | CDD | RING-H2_RNF126-like | 191 | 232 | - | - | |
Spst1g02214 | 394 | MobiDBLite | consensus disorder prediction | 239 | 261 | - | - | |
Spst1g02214 | 394 | Pfam | zinc-ribbon | 8 | 39 | IPR039525 | GO:0061630 | |
Spst1g02214 | 394 | Pfam | Protein of unknown function (DUF1117) | 268 | 373 | IPR010543 | - | |
Spst1g02214 | 394 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 232 | IPR001841 | - | |
Spst1g02214 | 394 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
Spst1g02214 | 394 | MobiDBLite | consensus disorder prediction | 346 | 394 | - | - | |
Spst1g02214 | 394 | MobiDBLite | consensus disorder prediction | 347 | 386 | - | - | |
Spst1g02214 | 394 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 101 | 236 | - | - | |
Spst1g02214 | 394 | FunFam | E3 ubiquitin-protein ligase RING1-like | 153 | 238 | - | - | |
Spst1g02214 | 394 | SUPERFAMILY | RING/U-box | 171 | 241 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02214 | Spst-Chr1 | 30527525 | 30528709 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02214 | 130 | 241 | C3H Transcription Factor Family | AT5G01980 | 41.071 | 4.72e-24 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02214 | K11982 | - | gmx:100807324 | 627.091 |