Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02208 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATGATAAGAGAGCAAGAGTTGATGGAGAACAATAACAAGGCGAATACTACTCCGACCAATAGCAGCAACAGCAACACCAACGCCAACACCAACACGACTGAGGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAACCAGAACCTCGGAAACCACGAAGGTTCAGAGCCCGGAAGCAGCGGTCGGAGGCCTCGTGGCAGGCCTCCCGGGTCAAAGAACAAGCCCAAGCCGCCGATCGTCATTACCAAAGAAAGCCCCAACGCTCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGAAGCGACGTGTCCGAGAGCATCGCCGCCTTTGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCTGCGCCCGCCGGTGTCATCACCCTCCACGGAAGATTTGAGATTCTCTCCCTCTCAGGGGCGTTTTTGCCCTCCCCTTCGCCGCCAGGCGCCACCGGACTCTCCGTCTATTTGGCCGGTGGGCAGGGACAGGTTGTCGGAGGCACCGTTGCGGGTTCTTTAGTGGCCTCCGGGCCGGTGATGGTGATCGCCGCCACATTCGCTAATGCTACCTATGAGAGGCTGCCACTGGAGGATGAACAAGGTGAAGAGGAAATGCAAGTGCAACAGCAGCAGCAGCAGCAACAGCAATCTCAGGGTTTAGGTGAACAAGTTTCAATGCCTATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTTTGGGGAGCTGCTCCGCCTCGTCCTCCACCTTCCTTCTGA 858 0.5769 MANRWWAGNVGMIREQELMENNNKANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLGNHEGSEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVSESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVFWGAAPPRPPPSF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02208 285 PIRSF ESCAROLA 11 284 IPR014476 GO:0003680
Spst1g02208 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 276 IPR014476 GO:0003680
Spst1g02208 285 Gene3D - 100 242 - -
Spst1g02208 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Spst1g02208 285 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Spst1g02208 285 MobiDBLite consensus disorder prediction 19 46 - -
Spst1g02208 285 CDD DUF296 101 212 IPR005175 -
Spst1g02208 285 MobiDBLite consensus disorder prediction 231 250 - -
Spst1g02208 285 FunFam AT-hook motif nuclear-localized protein 100 228 - -
Spst1g02208 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Spst1g02208 285 MobiDBLite consensus disorder prediction 224 252 - -
Spst1g02208 285 MobiDBLite consensus disorder prediction 18 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02208 Spst-Chr1 30481966 30482823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02208 1 285 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.226 3.58e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02208 - - gmx:102667174 408.683