Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02205 ATGGAGGAGTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAGGTCACATATTCAACAACCATTTGGAGCTGGCAACAACAGCACCACCTCTTCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCGCCAAGATCTTACTCATGTAATTTCTGCAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGCCTTAGTCACCATAATGAAGCCCTTCAACATCTTAACAAAAATGATTGTTCAGTTGCAACAAGCAAAGTCTCATCTTCTAAGCTCTCAACTATATCCACTCAAGAAAATTGTTATCATCAGCCTACCATGTCTCCTTACTCTTCTTCAACTAGTTGGGGACATCAGCACATGGGGTCTCCTGATTCAGAACCAAAAGGGTCTGCAGTGAATGGAAGGGAACATTTTTTAAAAGGTTTGGGTTGTAATGATTATGTTGAAACAAGTTTGTCCGTGGGACAAAGTTCAGTGTTTGGCCAAAAATTACCAATGGAATCATGTGGCGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCACAAACCATGTTCAAGTGATAGACACCTAACTTTTCAGTCTGCAGAGTTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 774 0.4276 MEESQYLLWFKRKQILRSHIQQPFGAGNNSTTSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNEALQHLNKNDCSVATSKVSSSKLSTISTQENCYHQPTMSPYSSSTSWGHQHMGSPDSEPKGSAVNGREHFLKGLGCNDYVETSLSVGQSSVFGQKLPMESCGDEAISYKRSKTSMPPLPVFHKPCSSDRHLTFQSAEFVLGLKPGMEDLDLELRLGKPQKVI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02205 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Spst1g02205 257 MobiDBLite consensus disorder prediction 138 158 - -
Spst1g02205 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Spst1g02205 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
Spst1g02205 257 Pfam C2H2-type zinc finger 58 82 - -
Spst1g02205 257 Coils Coil 84 104 - -
Spst1g02205 257 SMART c2h2final6 58 80 IPR013087 -
Spst1g02205 257 Gene3D Classic Zinc Finger 55 125 - -
Spst1g02205 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02205 Spst-Chr1 30461290 30462158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02205 33 90 C2H2 Transcription Factor Family AT2G37740 77.586 5.10e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02205 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02205 - - gmx:102663477 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02205 1 30461290 30462158 Spst8g00393 8 3843074 3843889 PCT