Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02187 ATGAAGGCGCTGATTTTGGTTGGAGGGTTTGGAACAAGGTTGAGGCCTCTGACACTCAGCGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTACATCAGATAGAGGCTCTCAAGGCCATTGGAGTGAATGAAGTGGTACTAGCTATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGAATTCGAGGCAAAACTTGGCATCAAAATCACTTGTTCTCAAGAAACTGAACCACTGGGTACAGCTGGCCCCTTGGCTCTTGCGAGGGATAAGCTGGTAGATGGCTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTGCATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTTACAAAGGTCGATGAACCATCGAAATATGGTGTGGTTGTGATGGATGAGACTACTGGGCAAGTTGAGAAATTTGTAGAGAAACCAAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGACCGACTTCTATCGAGAAAGAGGTGTTTCCTAATATTGCAGCAGCGAAAAAGCTATATGCAATGGTCTTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGACACTTTACCTGGACTCACTGAGGAAAAACTCTCCTTCTAAACTTGCCAGTGGTCCGCACATTGTGGGAAATGTTATTGTGCACGAAACTGCCAATATTGGTGAGGGATGTCTAATTGGACCGGATGTTGCAATCGGTCCTGGCTGTGTCGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACGGTTATGCGAGGAGTTCGGATTAGAAAGCACTCTTGCATATCCAGCAGTATCATTGGATGGCATTCCACTGTAGGGCAATGGGCCCGAGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTTTGTGATGAAGTTTACAGCAATGGTGGTGTAGTTTTACCCCACAAGGAGATCAAGTCAAACATTCTGAAGCCAGAGATAGTCATGTGA 1086 0.4475 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPLKEMIAFHKAHGGEASIMVTKVDEPSKYGVVVMDETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPNIAAAKKLYAMVLPGFWMDIGQPRDYISGLTLYLDSLRKNSPSKLASGPHIVGNVIVHETANIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIRKHSCISSSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02187 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Spst1g02187 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Spst1g02187 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Spst1g02187 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Spst1g02187 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Spst1g02187 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Spst1g02187 361 Gene3D Hexapeptide repeat proteins 238 358 - -
Spst1g02187 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02187 Spst-Chr1 30317588 30319577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02187 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.618 3.45e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02187 K00966 - gmx:100818016 694.501