Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02183 ATGGAGGTTCTAAGTTCTAATGGAACTTTTCTTTTGTTGTTGGAATTTCGGTGGGAAGCAGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAGGATTTTCAAAATTGGGTCCAGTAGAGGAAGGGGTGGTGGTCATCATCTACAGCAACCCGAAGAGGAAAACATGGTTTGGCCAGCTCCAGCTAGATCATTGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAGGATCTTGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACAGGGTATAGATGGCGAACAGGAGCAAGAACCGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCTCATCCTCCATATGCCCCTGTACCTGCTTATCCCCATGGATATGGTATGCCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATCTATGGCGATTGTTTAGGAGTCGGTCATAGTTATTTTCACCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCGATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGCTTTAAAGAATTGACCCATCCTAAATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAATTTGACAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGGATGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTACTATAAACGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAATATGAAGATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAGGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTACCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGCGTACAAAGACGGCCAAGAATTGGAGGTCATAGATTAATAGGGATGAGATCTCAACCTCAAAAGCTGCATAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCATAACCTTAGTCCTGAAGTAGAGGAGGGTATTTGTCAGGTACTTTCTTACATGTGGCTTGAGGCAGAGGTGGTGCCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCATCCTCCTACTCCTACTCCCACTCATCAAAGAAAGGTGCAAAATCTCATGCTGAACGTAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCTAATGGAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGACCATATTCTTTTGACTGGTAGATTCCCACTGTAA 1548 0.4302 MEVLSSNGTFLLLLEFRWEAGDFVSSYSERKSGFMKWFGRIFKIGSSRGRGGGHHLQQPEEENMVWPAPARSLDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARTDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGMPSHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEFDNTARCCSCERLESRDERYYRLEDGRILCFECMESTINDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLHRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVVPCARTMPSTSSASSSSYSYSHSSKKGAKSHAERKLGEFFMNQIANDSSPAYGGGFRAANGAVNKYGLRCTLDHILLTGRFPL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02183 515 SMART lim_4 150 201 IPR001781 -
Spst1g02183 515 MobiDBLite consensus disorder prediction 49 68 - -
Spst1g02183 515 CDD LIM_DA1 151 202 - -
Spst1g02183 515 ProSiteProfiles LIM domain profile. 149 208 IPR001781 -
Spst1g02183 515 Gene3D Cysteine Rich Protein 145 208 - -
Spst1g02183 515 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 175 - -
Spst1g02183 515 ProSitePatterns LIM zinc-binding domain signature. 151 184 IPR001781 -
Spst1g02183 515 Pfam LIM domain 151 203 IPR001781 -
Spst1g02183 515 Pfam Protein DA1 299 509 IPR022087 -
Spst1g02183 515 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 241 - -
Spst1g02183 515 PANTHER PROTEIN DA1-RELATED 2 37 514 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02183 Spst-Chr1 30216158 30221451 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g02183 DA1-like 1.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02183 - - gmx:100798829 892.493