Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02158 ATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACAGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCCCATTGCAAAGGAACATTAAAGCTGAGCAACTACTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCACTACGAGCAGCTCTTCAAGGAGACTGGGACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGCTAGCAGATAAGACAACTCCTGAGCTGACAAGGTCGCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACACAAGAAAAGTGTGCTACGTGTGGGAAAACTGCTTATCCATTGGAGAGGGTAACAGTGGAAGGACAGTCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCGAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTGACAAAGTCTGCATCAATCAAACGGGCAGCAGCAGCAGCAGCTGCACCCACTGTTCCTGAATCTTGA 585 0.4632 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLERVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAAAAAAAPTVPES 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02158 194 FunFam LIM domain and actin-binding 1 4 74 - -
Spst1g02158 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Spst1g02158 194 CDD LIM2_SF3 108 168 - -
Spst1g02158 194 Pfam LIM domain 10 65 IPR001781 -
Spst1g02158 194 Pfam LIM domain 108 163 IPR001781 -
Spst1g02158 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Spst1g02158 194 FunFam LIM domain and actin-binding 1 102 172 - -
Spst1g02158 194 Gene3D Cysteine Rich Protein 4 74 - -
Spst1g02158 194 Gene3D Cysteine Rich Protein 102 172 - -
Spst1g02158 194 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Spst1g02158 194 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Spst1g02158 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Spst1g02158 194 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Spst1g02158 194 SMART lim_4 107 159 IPR001781 -
Spst1g02158 194 SMART lim_4 9 61 IPR001781 -
Spst1g02158 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Spst1g02158 194 PANTHER OS06G0237300 PROTEIN 5 111 - -
Spst1g02158 194 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02158 Spst-Chr1 29837349 29839846 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Spst1g02158 LIM 1.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02158 K09377 - gmx:100809121 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02158 1 29837349 29839846 Spst1g02158 1 29837349 29839846 ECH