Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02158 | ATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACAGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGGTGCTCCCATTGCAAAGGAACATTAAAGCTGAGCAACTACTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCACTACGAGCAGCTCTTCAAGGAGACTGGGACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGCTAGCAGATAAGACAACTCCTGAGCTGACAAGGTCGCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACACAAGAAAAGTGTGCTACGTGTGGGAAAACTGCTTATCCATTGGAGAGGGTAACAGTGGAAGGACAGTCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCGAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTGACAAAGTCTGCATCAATCAAACGGGCAGCAGCAGCAGCAGCTGCACCCACTGTTCCTGAATCTTGA | 585 | 0.4632 | MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLERVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASIKRAAAAAAAPTVPES | 194 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02158 | 194 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
Spst1g02158 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 173 | - | - | |
Spst1g02158 | 194 | CDD | LIM2_SF3 | 108 | 168 | - | - | |
Spst1g02158 | 194 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
Spst1g02158 | 194 | Pfam | LIM domain | 108 | 163 | IPR001781 | - | |
Spst1g02158 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 100 | 133 | - | - | |
Spst1g02158 | 194 | FunFam | LIM domain and actin-binding 1 | 102 | 172 | - | - | |
Spst1g02158 | 194 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
Spst1g02158 | 194 | Gene3D | Cysteine Rich Protein | 102 | 172 | - | - | |
Spst1g02158 | 194 | ProSiteProfiles | LIM domain profile. | 106 | 166 | IPR001781 | - | |
Spst1g02158 | 194 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
Spst1g02158 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
Spst1g02158 | 194 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
Spst1g02158 | 194 | SMART | lim_4 | 107 | 159 | IPR001781 | - | |
Spst1g02158 | 194 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
Spst1g02158 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
Spst1g02158 | 194 | PANTHER | OS06G0237300 PROTEIN | 5 | 111 | - | - | |
Spst1g02158 | 194 | CDD | LIM1_SF3 | 6 | 68 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02158 | Spst-Chr1 | 29837349 | 29839846 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Spst1g02158 | LIM | 1.9e-11 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02158 | K09377 | - | gmx:100809121 | 379.022 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02158 | 1 | 29837349 | 29839846 | Spst1g02158 | 1 | 29837349 | 29839846 | ECH |