Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02141 ATGCCTTCTTCTTCTTCTCCTCGTTGTGATGATGCACTTACCATCCTCTCAAAATGCACTGTTGTGCCAGACCAAGATTCCACTCTCGGAGATCTAAAGCTCTCTATCTCAGACCTTAACATGCTGTTGTCTCACTACATCCAAAAGGGGTGTCTCTTCTCCACCCCATCTATCCCCGCTCACACTCTCATCCCTCACCTCATCAACGCGCTTTCTCGCACGCTCTCCTTTTTTCCTCCCTTCGCTGGTCGTCTCAAAACTGACGTTCATGGCTACGTCTACATCTCATGCAACGATGCTGGCGTCGACTTCATCCACGCTACCGCCGTTGATATCTCCGTCACCGACCTCCTGTCAACGTCCGATGTTCATCCAACCTTCAACCGGCTCTTCCCTTTCCACCACAAAATTAGTTACACTGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGTTCGCTGACGGTGTTTTCATTGGTTGTGCTGTCTGCCACGCCGTCACCGATGGAGCCTCCTTCTGGAACTTCTTTAACACCTTCGCCGCAGTTTCTCAAGGAGCAACCGTTTGCCCCTCTATCCTCCCTGATTTTCGTCGGGACTCCATCCTCACCTCCAAGGTCGTGCTTCGGCTGCCAAAAGAAATCAAGGTCACCTTCAATGTTGACGCACCCTTTCGCGAGAGAATCTTCAGCTTCAGCCGCGAATCAATTCAGAAGCTGAAAGCCATAGTGAATAATGGTGGAACAAAATTTTCGTTGGAGAATGTCGAGTTGATGGCAAAGCTTAGCAACGATACTGAAGTGAAAACGGTTACAAGAGGCGTAAGTAACGAAACGAGAGAGATTTCGTCGTTTCAGTCGCTGTGTGCGCTGATGTGGCGGTGCGTTACTAGGGCGAGGAATCTGGAAGGGCCTCAAGTGACGACGTTTCGAATGGCAGTTAATGTTCGGCAACGCATGGAGCCAAAGTTGGGTGATCATTACTTTGGGAACGCGATTCAGACCATTGCCACGTGTGCAGAAGCGCGTGACGTGGTGTCTAGCGACCTTCCATGGTGCGCGGAGCAACTGAACAAAAGCGTGAAGGCGTTCGACAGCGCTACGGTGTGTCGCAACGTGGAGAATTGGGAGCGTGAGCCAAAGTGCTTCGAGTTGGGAAACCACGATGGCGCCACTGTGCAGATGGGAAGCTCGCCGAGATTTCCGATGTATGACAATGATTTCGGATGGGGGCGGCCCTTGGCCGTACGGAGCGGTGGAGCGAACAAGTTTGATGGGAAGATGTCGGCGTTTCCCGGGAGGAATGGCGGTGGTAGCGTTGATTTGGAGGTTGTTTTGGCGCCTGACTCCATGGAGCAACTTGGGTCTGATCCTGAGTTCATGTTTTATGTTTCCGGTTAG 1404 0.5178 MPSSSSPRCDDALTILSKCTVVPDQDSTLGDLKLSISDLNMLLSHYIQKGCLFSTPSIPAHTLIPHLINALSRTLSFFPPFAGRLKTDVHGYVYISCNDAGVDFIHATAVDISVTDLLSTSDVHPTFNRLFPFHHKISYTAHSSPIMAFQVTEFADGVFIGCAVCHAVTDGASFWNFFNTFAAVSQGATVCPSILPDFRRDSILTSKVVLRLPKEIKVTFNVDAPFRERIFSFSRESIQKLKAIVNNGGTKFSLENVELMAKLSNDTEVKTVTRGVSNETREISSFQSLCALMWRCVTRARNLEGPQVTTFRMAVNVRQRMEPKLGDHYFGNAIQTIATCAEARDVVSSDLPWCAEQLNKSVKAFDSATVCRNVENWEREPKCFELGNHDGATVQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGSVDLEVVLAPDSMEQLGSDPEFMFYVSG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02141 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 15 462 - -
Spst1g02141 467 Pfam Transferase family 13 462 - -
Spst1g02141 467 Gene3D - 217 457 IPR023213 -
Spst1g02141 467 Gene3D - 13 216 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02141 Spst-Chr1 29556139 29557750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02141 37 453 Monolignol Biosynthesis Gene Families AT5G48930 27.972 6.85e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02141 - - vum:124828482 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02141 1 29556139 29557750 Spst8g00455 8 4312511 4313965 PCT