Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02139 ATGTCTTCTTTTCCCTGTGACTCACTCACTGTCCTCTCAAAATGCAACGTTGTTCCTCACAAGAACTCTACTTTGGGAGATCTCAAACTCTCTCTCTCAGACCTTAACATGCTCCTATCCCACTACATCCAAAAGGGCTGTCTCTTCACCTCCCCGTCTCTACCCCCCAACACTCTCATCCCTCATCTCACCAACGCACTCTCTCACACGCTCTCCCTTTTTCCTCCCTTTGCTGGCCGTCTCAAAACCGATGCTGATGGCTACGTCTATATCACATGCAACGACGCTGGCGTCGACTTCATCCACGCCACTGCCGTCGATATCTCTGCCGCAGACCTCCTGTCAACGTCTGATGTTCATCCAACCTTCAACCAGTTCTTTCCTTTCCACCACAAAATTAGTTACACTGCACATTCCTCCCCCATCATGGCCTTTCAGGTCACGGAGCTCGTTGATGGCGTTTTCATCGGTTGTGCTGTCTGCCACGCCACCACTGACGGTGCCACCTTGTGGAACTTCTTTAACGCGTTCGCCGCAATTTCTCGAGGAGAAACCTTCTCTCCCTCTAAGCTCCCAGATTTTCGTCGGGATTCCATCCTCACCTCGAAGGTTGTGCTTCGACTGCCAAAAGAAATCAAGGTAACCTTCGATGTTGACGCGCCCTTTCGCCAGAGAATCTTCAGTTTTAGCGGTGAAGTAATTCAGAAGCTGAAAGCCACAGTGAACAAAGGTCGGTTAGTGTTTACGCCAAAGCACGTTGACGTGGCTGTTGAGTTGATGGCGAAGCTAAACACCGATACAGAACAGAAAATAGCTACAAAAGGTGTAAGTGCTGAAACAACAGAGATTTCTTCCTTCCAATCGTTGTGCGCACTGATGTGGCAGTGCGTGACGAGGGCGAGGAACATGGAGAAGTCTAAAGTGACGACGTTTCGAACGGCAGTAAACATTCGGCAACGCATGAAGCCCAAGTTGGGAAATTCTTACTTTGGAAATGCGCTTCAGAGCATTTCCACGTCTGCAACAGTGGGTGATCTGGTGTCCAAGGACCTTCAATGGTGCGCAGAGCAACTGAATAGGAGCGTGAAGGCGTTTGATAGCGCTACAGTGCAGCGTAACGTGGAGAATTGGGAGCGTGAGCCCAAGTGCTATGAGTTAGGGAACCATGACGGCGGCACTGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTATGACAACGATTTTGGATGGGGCCCGCCCATAGCCGTGCGGAGCGGCGGAGCAAACAAGTTTGACGGTAAGTTGTCGGCCTTTCCTGGGAGGACTGGCAGTGGCGCCGTCGATGTGGAGGTGGTTCTGGCGGCTGACACAATGGCGCGACTCGAGTCCGACCCTCAATTCATGCTTTACGTCTCTGCTTAG 1404 0.5142 MSSFPCDSLTVLSKCNVVPHKNSTLGDLKLSLSDLNMLLSHYIQKGCLFTSPSLPPNTLIPHLTNALSHTLSLFPPFAGRLKTDADGYVYITCNDAGVDFIHATAVDISAADLLSTSDVHPTFNQFFPFHHKISYTAHSSPIMAFQVTELVDGVFIGCAVCHATTDGATLWNFFNAFAAISRGETFSPSKLPDFRRDSILTSKVVLRLPKEIKVTFDVDAPFRQRIFSFSGEVIQKLKATVNKGRLVFTPKHVDVAVELMAKLNTDTEQKIATKGVSAETTEISSFQSLCALMWQCVTRARNMEKSKVTTFRTAVNIRQRMKPKLGNSYFGNALQSISTSATVGDLVSKDLQWCAEQLNRSVKAFDSATVQRNVENWEREPKCYELGNHDGGTVQMGSSPRFPMYDNDFGWGPPIAVRSGGANKFDGKLSAFPGRTGSGAVDVEVVLAADTMARLESDPQFMLYVSA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02139 467 Gene3D - 9 211 IPR023213 -
Spst1g02139 467 Pfam Transferase family 9 461 - -
Spst1g02139 467 Gene3D - 212 457 IPR023213 -
Spst1g02139 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02139 Spst-Chr1 29529951 29531900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02139 33 456 Monolignol Biosynthesis Gene Families AT5G48930 27.002 1.95e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02139 - - vum:124828482 781.171