Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02136 ATGGACGTGATAAAGACGCAGCAAATATCATCTCGACCAATCGAGAAGGTCGTGGTTCATCCGCTCGTGCTTCTTAGTATCGTCGACAACTACAACAGAGTGGCCAAGGACACGCGTAAGCGCGTTGTCGGCGTTTTGCTCGGTTCCACTTTCAAAGGCACCGTCGACGTTACCAACAGCTACGCCGGTTTGGATCTGTCTTTCTCTTTTGTCCATTGCCGCATTCCTTTACTCAATCGTTATTGGAGTTGTTGCGAGGATTTATGCCCTAATTTTATCGCGGTAATAGATAATTGTTTGCCGTTTGAAGAAGATGACAAGGATCCCAGCATCTGGTTTCTTGATCACAATTACCATGAATCAATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTACAGCACTGGTCCAAAGCTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAATGACTATGTTCCTAATCCTGTTCTGGTTATTATTGATGTTGAACCCAAGGAATTGGGAATCCCAACAAAAGCATATTATGCCGTGGAAGAAGTCAAAGAGAATGCCACCCAAAAAAGTCAAAAGGTTTTTGTTCATGTGCCATCAGAGATTGCAGCTCATGAAGTTGAAGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAAATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCCAATCTTAATGTTGCTGATCTTATCAAGGCGTTTGCAGTTAAAACAAATGATATGATGCTGGTCATATACTTGTCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAGCATGAACGAGCAGAAGACTCGAAAACGGTTGCAGTGCCGAGTGCAGCTGCATAA 1041 0.4227 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVTNSYAGLDLSFSFVHCRIPLLNRYWSCCEDLCPNFIAVIDNCLPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKTVAVPSAAA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02136 346 CDD MPN_RPN7_8 15 332 IPR033858 GO:0005838
Spst1g02136 346 SMART pad1_6 16 187 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g02136 346 Pfam Maintenance of mitochondrial structure and function 211 322 IPR024969 -
Spst1g02136 346 Gene3D Cytidine Deaminase, domain 2 9 231 - -
Spst1g02136 346 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 100 161 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g02136 346 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 62 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g02136 346 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02136 Spst-Chr1 29504896 29508396 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02136 19 285 Eukaryotic Initiation Factors Gene Family AT2G39990 24.723 7.80e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02136 K03038 - gmx:100790393 585.104