Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02134 ATGGCGTCGAGCGATCGCACAGTGTTGCAGTTCTCTTTATCATCATCTTCGCAAAGCTTATCCGCGAAGGTCCACCCTCTCGTTATCTTCAACATCTGTGATTGCTACGTTCGGCGCCCTGACCAAGCCGACCGCGTCATTGGAACCCTACTCGGCTCCGTCCTTCCCGACGGAACCGTCGATATTCGCAATTCCTATGCTGTTCCTCACAACGAGTCTATCGAGCAGGTTGCTTTGGACATAGAGTATCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAGTTTTATTCTCGAGAAGTACAAAATCCTATTCATTTGACTGTTGATACTGGATTTACAAATGGAGGGGGTACCATCAAGGCATATGTGTCTCACAATTTATCTCTTGGAGATCGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATTTGATATGCTTAAGGCAACTGCAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTACTAGTCTTGATTGATGATATCTACAAATATGTAGACGATGTTGTGGAAGGACGAGTTGCACCTGACAACAAAATCGGGAGATTTATATCTGATGCTGTAGGTTCCCTTCCTAAAGTGTCACCACCAGTTTTTGATAAGCTTGTGAATGATTGCTTGCAGGATCACTTGCTTTTGCTATATTTATCCAGCATCACAAGAACGCAGCTTAGCTTGGCGGAAAAATTGAACACAGCTGCTCAGATTCTGTGA 864 0.4306 MASSDRTVLQFSLSSSSQSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTGFTNGGGTIKAYVSHNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPPVFDKLVNDCLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02134 287 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g02134 287 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 20 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Spst1g02134 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 284 - -
Spst1g02134 287 FunFam Eukaryotic translation initiation factor 3 subunit F 9 188 - -
Spst1g02134 287 SMART pad1_6 21 152 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g02134 287 CDD MPN_eIF3f 23 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Spst1g02134 287 Gene3D Cytidine Deaminase, domain 2 9 188 - -
Spst1g02134 287 Pfam Maintenance of mitochondrial structure and function 174 280 IPR024969 -
Spst1g02134 287 ProSiteProfiles MPN domain profile. 22 153 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02134 Spst-Chr1 29492761 29496780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02134 2 287 Eukaryotic Initiation Factors Gene Family AT2G39990 75.945 1.39e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02134 K03249 - gmx:100811797 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02134 1 29492761 29496780 Spst1g02134 1 29492761 29496780 ECH