Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02130 ATGGCGTCGAAACTCACGAAAGCGCAGAAGAAGATAGCGTACGATGCCAAACTGTGTCGGCTTCTGGATAACTACACCCAAATTCTGGTCGTGGCTGCGGACAACGTGGGATCCAACCAGCTTCAGAACATTCGACAGGGCCTACGTGGCGACTCCGTGGTCCTCATGGGAAAGAACACCATGATGAAACGCTCTGTTAAACTCCATGCCGAGAGAACCGGCAACGATGCCTTCCTCAACCTTATTCCTCTTCTAGTCGGTAATGTGGGGTTGGTTTTCACCAAAGGTGACGTGAAAGAGGTTAGCGAAGTGATTGGCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGGTTGATTGCACCTATTGATGTTGTTGTTCCGCCAGGCAACACAGGGTTGGATCCCTCTCAAACTTCTTTCTTCCAGGTGCTTAACATACCTACCAAGATTAACAAGGGTACTGTGGAAATTATCACCCCTGTGGAACTCATTAGGAAGGGTGAGAAGGTGGGGTCTTCTGAAGCTGCATTGCTTTCGAAGCTTGCGATAAGGCCCTTCTCCTATGGGCTTGTTGTGGTTTCTGTTTATGACAATGGTTCGGTGTTTAGCCCTGAGGTTCTTGACCTCACTGACGATGACCTCCTTAATATGTTTGCTGCTGGTGTCTCCATGGTCTCTTCACTGTCCTTGGCTATCTCGTACCCAACAATTGCAGCTGCACCACACATGTTTGTCAATGCCTATAAGAACGTCCTCTCTGTTGCAGTGGCCACAGAATATTCGTTCCCCCAGGCTGACGAGGTTAAGGAGTACCTGAAGGATCCTAGTAAATTTGCAGTAGCTGTTGCCGCCGCACCTGATACTGGTTCTGCTCCAGCCGATGCCGCCAAGGAGGAGGAAAAGAAGGAAGAACCAGAAGAATCTGACGATGACATGGGCTTTAGTTTGTTTGATTAA 957 0.4922 MASKLTKAQKKIAYDAKLCRLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSVVLMGKNTMMKRSVKLHAERTGNDAFLNLIPLLVGNVGLVFTKGDVKEVSEVIGKYKVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLSKLAIRPFSYGLVVVSVYDNGSVFSPEVLDLTDDDLLNMFAAGVSMVSSLSLAISYPTIAAAPHMFVNAYKNVLSVAVATEYSFPQADEVKEYLKDPSKFAVAVAAAPDTGSAPADAAKEEEKKEEPEESDDDMGFSLFD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02130 318 CDD Ribosomal_P0_L10e 9 185 - -
Spst1g02130 318 FunFam 60S acidic ribosomal protein P0 113 186 - -
Spst1g02130 318 MobiDBLite consensus disorder prediction 303 318 - -
Spst1g02130 318 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Spst1g02130 318 Gene3D - 6 209 IPR043141 -
Spst1g02130 318 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 303 - -
Spst1g02130 318 MobiDBLite consensus disorder prediction 284 318 - -
Spst1g02130 318 Pfam Ribosomal protein L10 8 108 IPR001790 -
Spst1g02130 318 PIRSF L10E 1 318 IPR030670 GO:0042254
Spst1g02130 318 Pfam 60s Acidic ribosomal protein 234 317 - -
Spst1g02130 318 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Spst1g02130 318 Gene3D - 114 185 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02130 Spst-Chr1 29442662 29444991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02130 1 317 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.549 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02130 K02941 - qsa:O6P43_008964 530.406