Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02124 ATGGCCGCCACCGCCGCCACCACCTCATACTTCTTTGGCACCCGTCTCAACAGCCCGACAACCTTAAACACCGGAAGATTCCACGCGCTCTTCAACTTCGGCAAGAAGAAGGCGCCGCCGCCGCCGCCAAAGAAAAAGGAAGTGAAATCGAAACCCGCCTCCAGCAACCGGCTGGTGTGGTTCCCAAATGCGGAGTCGCCGGAGTGGCTCGATGGAAGCATGATCGGCGACCGCGGGTTCGATCCCTTTGGGTTCGCGAAGCCCGCGGAGTACCTGCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGCGAGGTGATCGGAACCAGGGTGGAGGTTGCGGAGGTCAAACCGACGCCATTTCAACCCTACACGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGTGAAGTCATTCACGGAAGATGGGCAATGCTGGGTGCTCTCGGAGCTTTGGCCGTTGAGGCTCTCACCGGAGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACTTGGGGCTGCCTCTTCCATTTTCATTGACTACACTGATATGGATCGAGGTGATAGTGATAGGATACATAGAGTTTCAAAGAAATGCAGAACTTGACCCTGAGAAAAGGTTGTATCCAGGAGGCAAATTCTTCGACCCTCTGGGTTTGGCCAACGACCCTGAAGAAAAAGCAAGACTTCAACTTGCAGAGATCAAGCATTCTCGCTTGGCCATGGTGGTCTTCCTCATCTTTGCCATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTATTGCCACCTTCAACAAACTAATGGGGAGGTTGTTTGTGGTGAATCTGGAAGGGAAGATCTATAGCTGCAAACACTGTCATACCCATCTTGCTCTTTACGATGACATCTACTCGAAGACATTCCAATGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTATTGGAGAAATGGAGGACAGACTGATGATGACTGGGTTACATACCGTTGCCGACATTTTTTGTGTGGGTTGTGGATCAATCGTGGGTTGGCAATATGAAACTGCCTATGAAAAAAACCAGAAGTACAAGGAAGGGAAATCCGTGCTTGAACGGTACAAAGTGTCGGGTCCTGATGGAAGCAATTATTGGATCAGCCATGAGGCAAATGTTGGTGGAAGTGATGCAGATGATGCTTAG 1227 0.5094 MAATAATTSYFFGTRLNSPTTLNTGRFHALFNFGKKKAPPPPPKKKEVKSKPASSNRLVWFPNAESPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGEVIGTRVEVAEVKPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFIATFNKLMGRLFVVNLEGKIYSCKHCHTHLALYDDIYSKTFQCRHGKAYLFNKVVNVSIGEMEDRLMMTGLHTVADIFCVGCGSIVGWQYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISHEANVGGSDADDA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02124 408 Pfam Chlorophyll A-B binding protein 67 262 IPR022796 -
Spst1g02124 408 MobiDBLite consensus disorder prediction 33 54 - -
Spst1g02124 408 Gene3D Chlorophyll a/b binding protein domain 58 285 - -
Spst1g02124 408 ProSiteProfiles Yippee domain profile. 291 388 IPR034751 -
Spst1g02124 408 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 31 275 IPR001344 GO:0009765|GO:0016020
Spst1g02124 408 SUPERFAMILY Chlorophyll a-b binding protein 53 276 - -
Spst1g02124 408 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 292 384 IPR004910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02124 Spst-Chr1 29384045 29390436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02124 12 275 Chloroplast and Mitochondria Gene Families AT3G08940 72.348 1.20e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02124 K08915 - gmx:100820335 488.034