Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02111 ATGTATATGCCTGTGACAATTGGATTTGAATATTTTTGGCGAATAAACGTTGCAGCGAAAGCGTTGAAACTGGTAGATGACAAAAGCTTAATTGCAGATAGTGTTGGAATGGAAATCTCAATTGATTGTCTTTTGCAGCTGCTGCCTGTAATGGCCTCCAGAACAACTGGAACTCTGGTTTTGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTTCACTTGGTAGACAACAGGAACAACAACCCATCCTCTCGCAGTAAATTCATCTCAACTCAACAGCGCTCTGCTACCCCTTTGGGACAGGATTTGGAGGGTGTCACTCACAAGGTGTATTTTGATATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATTGGCCTTTTTGGGAACACAGTTCCGAAAACTGTAGAAAACTTTCGAGCGCTTTGTACGGGAGAGAAAGGAATGGGTAGAAGTGGGAAATCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGACCAGGATACTTATCTATGGCAAATTCTGGGCAAGACACCAATGGCTCCCAATTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGTCATGTTGTATTTGGGAAGGTACTTTCTGGTATGGATGTTCTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAAGTTGTCATATTAGACAGTGGAGAATTAACTTCATGA 855 0.4292 MYMPVTIGFEYFWRINVAAKALKLVDDKSLIADSVGMEISIDCLLQLLPVMASRTTGTLVLVCLLWLFFLCATIAFFQLHLVDNRNNNPSSRSKFISTQQRSATPLGQDLEGVTHKVYFDIEIHGKLAGRIVIGLFGNTVPKTVENFRALCTGEKGMGRSGKSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVILDSGELTS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02111 284 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 166 183 IPR020892 GO:0003755|GO:0006457
Spst1g02111 284 FunFam Peptidyl-prolyl cis-trans isomerase 111 283 - -
Spst1g02111 284 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 119 278 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 Gene3D - 107 284 IPR029000 -
Spst1g02111 284 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 118 281 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 SUPERFAMILY Cyclophilin-like 113 282 IPR029000 -
Spst1g02111 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 183 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 229 241 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 242 257 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Spst1g02111 284 CDD cyclophilin_ABH_like 115 280 - -
Spst1g02111 284 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 116 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02111 Spst-Chr1 29294020 29299694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02111 129 279 U-box Gene Family AT5G67530 43.791 1.63e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02111 K01802 - gmx:100792649 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02111 1 29294020 29299694 Spst1g02111 1 29294020 29299694 ECH