Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02104 ATGATCCAATCGTTAACACGAAACTTCTCTTTTCTTGCCTCGCACCTTCTCATCGCAACTAATACAAAACATGTTGGGTTGAGTCTATACACACATACTTTCTGTTGCAGATCAAATGAAATGGAGAGTGAAATTGATGAGAGCATTGACATGGCGGATTATTTTACATTTGATGCATTTAGTTTTTTTACTTTGGCAGTGGACAATGAGATAAGAAGTGGGACTTCTTCAAATTTGGGAGCATCCCCCCGTGTCCATAGTTTTGCTTCGATGGTGGACATTGCCATAAGGAGTAGGACTTCGTCAAATTGGGAAACATCTTCTCGTGTCTGCGGTTTTGCTTCGGGAGTGGGCAGTGCCATAAAGAGTAGGACTCCGTCAAATTTGGGAACTCCTCGTGTCCATAGTTTTTCTTCGGGAGTGGACTTTGTGATTAGGAGTAGTAGTGGAGGAACGGATTTAGAAACCTCCCCTGTGCATGGTTTGGCTTCGGAAGTTTATACGAGGAATGTTGCTGCAGGATCATCACAAGTTCCGTTGAATGCCACGGGACTTTTTGTTGAAGGATTACAATTATTCAGCCTGGCTGAGCTTGTAGATGCTACCGACAATTTCTCACATCACAACAAGATTGGTGTTGGAAGCTTTGGTGTCGTGTACGGAGGCAAACTTGTTGATGGTAGTGAAGTGGCTATCAAAAGGAATGAAACCAGTTCCAAGATGAAGGAGTTTCAAAAGATTGTTTTTGGGTATTTATTGACCTTCTTGCGACGTCTACACCACGAACACTTGGTAGGACTAGTTGGGTTCTGTGAAGAAAAAGATGATAGACTCTTGGTGTACGAGTACATGAAGAATGGATCGTTGTATGACCATTTGCATCACAAGGGTAGCATTGTGTTGAATTCGTGGAAAACGAGGATCAAGATTGCTTTGGATGCTTCCAGAGGAATAGAATATCTTCATTACTATGCAGGTACAAATATTTACAGGGCTATAAAGTCTTCTAACATTCTTCTTGATGATACATGGACGGCAAGAGTTTCTGATTTTGGATTGTCGTCGTTGATGGAAGCAGCAGGAACTATTGGATACATAGATTCTGAGTTCTGCAGTCTATATGTGTTGACAGCAAAGAGTGAAGTGTATGCGTTTGGAGTTGTACTGCTTGAGATTTTAACGGGAAAGACACCTATATTGTGCGGTGAAGATGGAAGCACCCCATTAAGTGTGGTGGAGTTTGCAGTGCCTCCAATTTTGGCTGGGGATTTGGCCAAAATTTTGGATCCAAGGGTTGGAGCACCCCGTGTCAATGAAGCAAAGGCAGTGGAGTTAGTGGCCTATACTGCTATCCGTTGTGTGAATTTGGAAGGGAAAGATAGACCATCTATGGCTGAAATTGTGCTCAATTTGGAAAAATCTTTGGATATTATTTGTGATATATAG 1446 0.4212 MIQSLTRNFSFLASHLLIATNTKHVGLSLYTHTFCCRSNEMESEIDESIDMADYFTFDAFSFFTLAVDNEIRSGTSSNLGASPRVHSFASMVDIAIRSRTSSNWETSSRVCGFASGVGSAIKSRTPSNLGTPRVHSFSSGVDFVIRSSSGGTDLETSPVHGLASEVYTRNVAAGSSQVPLNATGLFVEGLQLFSLAELVDATDNFSHHNKIGVGSFGVVYGGKLVDGSEVAIKRNETSSKMKEFQKIVFGYLLTFLRRLHHEHLVGLVGFCEEKDDRLLVYEYMKNGSLYDHLHHKGSIVLNSWKTRIKIALDASRGIEYLHYYAGTNIYRAIKSSNILLDDTWTARVSDFGLSSLMEAAGTIGYIDSEFCSLYVLTAKSEVYAFGVVLLEILTGKTPILCGEDGSTPLSVVEFAVPPILAGDLAKILDPRVGAPRVNEAKAVELVAYTAIRCVNLEGKDRPSMAEIVLNLEKSLDIICDI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02104 481 Gene3D Transferase(Phosphotransferase) domain 1 284 477 - -
Spst1g02104 481 ProSitePatterns Protein kinases ATP-binding region signature. 211 233 IPR017441 GO:0005524
Spst1g02104 481 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 128 480 IPR044815 GO:0004674
Spst1g02104 481 Gene3D Phosphorylase Kinase; domain 1 167 283 - -
Spst1g02104 481 SUPERFAMILY Protein kinase-like (PK-like) 184 471 IPR011009 -
Spst1g02104 481 ProSiteProfiles Protein kinase domain profile. 205 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02104 481 Pfam Protein kinase domain 206 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02104 Spst-Chr1 29239983 29241428 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02104 193 480 Receptor kinase-like Gene Family AT3G55950 57.911 3.27e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Spst1g02104 Pkinase 3.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02104 - - vun:114193227 418.698