Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02102 ATGGACATTGAAATCTTTAGCAGAATTGGCATGGCTGATATCGCAGTTGATGCAACGACTTTTAGTTGGGCAGTGGACAGTGCCATATGGAGTGAGAGTACGTCAAATATGGGAGAATCTCGTGTCCATAGTTTTGCTTCGGTAGTGGACAGTGCCATAAGGAGTAGCACTGATACTGAAGCAGATTTGGAAACGTCCCCCATCCATTATTTTTCTTTTGCTTCTGCGGTGGACAAAAGGACTGCTGCTGCACGATTATCACAAGCAGCGTCGGATGGGAGAGGACATGTTGCTGCGCGATTATTCACCCTGTCTGAGCTTAAAGCAGCCACCAATAATTTCTCACTTCACAACAAGATTTTTAGTGCTGGAAGCATTAGTGTTGTGCATAGAGGCAAACTCTTTGATGGCCGTGAGGTGGCTATCAAAAAGGCTGAAACCAGTTCTAAGGTGAAGGATTTTCAAGAGGTATTTGGCTATTTATCGAACCTTTTGCCCCGTCTATGCCATAAGCACTTGGTTGGACTAGTTGGGTTCTGTAAAGCTAAAGATAAAAGGTTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATGATCATTTGCATGACAAAAACAATGTGGACAAGGGGAGCAGTGTGTTGAATTATTGGAGAATGAGGATCAAGATTGCCTTGGATGCTTCGCGGGGAATAGAACATCTTCATAATTATGTAGTTCCATCTATTATTCACAGAAATATAAAGTCTTCCACCATTCTTCTTGATTCTACTTGGACGGCAAGAGTATCTGATTTTGAATCGTCGTGGTTCATGAGTCCAGAACCTGACCATGTTTACATGGATACAAGTTTGTTGACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACAGGAAAGAAAACTATGTTCAAGTATGGCAGGAATAGAGACACCAGTATGGTGAACATTGCACGGCGTGTTATTTTGGCTGGTAAAATGGTGAAAATTTTGGATCCAAGGGTTGGACGACCACATGTGAATGAAGAAGCAGAGGCCCTGGAGTTAGTGGCCCATACAGCGGTCAGTTGTGTAAATTTGAAAAGGAAAGATAGGCCAACAATGGCTGAGGTAGTGGCCAATTTGGAGAGGGCTTTAGCTATTTGCGATCTTGGCCCGTGA 1179 0.4326 MDIEIFSRIGMADIAVDATTFSWAVDSAIWSESTSNMGESRVHSFASVVDSAIRSSTDTEADLETSPIHYFSFASAVDKRTAAARLSQAASDGRGHVAARLFTLSELKAATNNFSLHNKIFSAGSISVVHRGKLFDGREVAIKKAETSSKVKDFQEVFGYLSNLLPRLCHKHLVGLVGFCKAKDKRFLVYEYMKNGALYDHLHDKNNVDKGSSVLNYWRMRIKIALDASRGIEHLHNYVVPSIIHRNIKSSTILLDSTWTARVSDFESSWFMSPEPDHVYMDTSLLTAKSDVYGLGVVLLELLTGKKTMFKYGRNRDTSMVNIARRVILAGKMVKILDPRVGRPHVNEEAEALELVAHTAVSCVNLKRKDRPTMAEVVANLERALAICDLGP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02102 392 Gene3D Transferase(Phosphotransferase) domain 1 193 388 - -
Spst1g02102 392 ProSiteProfiles Protein kinase domain profile. 115 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02102 392 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 72 389 IPR044815 GO:0004674
Spst1g02102 392 Gene3D Phosphorylase Kinase; domain 1 74 192 - -
Spst1g02102 392 Pfam Protein kinase domain 123 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02102 392 SUPERFAMILY Protein kinase-like (PK-like) 97 381 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02102 Spst-Chr1 29232157 29233335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02102 99 388 Receptor kinase-like Gene Family AT3G55950 54.969 1.85e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Spst1g02102 Pkinase 6.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02102 - - vra:106757051 560.066