Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02100 ATGGCGAATTCAGGAGCATCCCGTGTTCATAGTTTTGCTTCGATATTGGAATATGCTATCAAAAGTATGGGAGGAGATTTGGGGGCATTGCCTCGGCGTGGTTTTGCTTTGGCAGTGGAGGATGCGTGGAATAGTATGGGAGGAGATTTAGGAGCATTACCTGTGCATGCTTTTGCCTCGATAGTGGAGAATGCTATCAGTAGCATCAGTGGAGATTTGGGAATATCCCATTCCCCTGTGCATAGTTTTGCTTCAATAGTGGAGAATGCTATCAGTAGCATTAGCGGAGATTTGGGAACATCCCGTTCCCCTAATCATGGTTTTGCTTCGACAGTGGAGAATGCTATCAATAGCATTACTGGTGATTTAGGAACATCCCACTCCCCTGTGCATGATTTTGCTTCGATACTGGAGAATGCTATCAGTAGCATTACTGGAGATTCGGGAATATCTCACTCCCCTGTGCATGGTTTTGCTCCGACAGTGGAGAATGCTATCCGTAGCATTGCTGGAGATTCGGAAATATCCCATTCCCCTGTGCATGGTTTTCAAGTATTCACCTTAGTTGAGCTTGCAGCAGCCACCAACAACTTCTCAGTTGACAACATGATCGGTGGTGGAAGCTTCAGTGTTGTGTACAGAGGCAAACTCGTTGATGGTAGTGAGGTTGCAATCGAAAGGGACGAAATGTGGTCTTGTAGAACGCATATGCAGTCTTTCTTGTCCGTCTGGTGGAGAACGTCTGATTTGACCTTCTTGTCCGGTTTACGCCCCAAGAACATGGTCGGGCTGGTTGGGTTGTGTGAAGAGAAAGATGAGAGGCTCTTGGTGTATGAGTTCACAAAGAATGGGTCGTTATATAATCATTTGCATTGCAATGGTAGCAATGCGTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAAGTATGGAGTTCCATCTACTATTCACGGAGACATCAGGTCTTCCAAAATTCTTCTTGATGCTGATTGGACGGCAAAGGTATGTAACTTTGGAAAGGCAGCAGGAACCATTGGATACATTGATCCTGAGTACTTAACTCGTCATGTATTAACAGAAAAGAGTGATGTGTATGGGTTTGGAGTTGTACTGCTTGAACTTTTAACAGGAAAGAGACCTATATGTGGGGAAGATGGAGGCACCCGATCGCATGTGATAACCTTTGCAGAGCCTGCTATTTTGGCTGGGGATTTTGTGAAAATTTTGGATCCCAGGGTTGGAAAACCCCGTGTCAATGAAGCAAAGGCAGTGCAGTTGATGGCCTATACTGCCATCAGTTGCGTAAATGTGAAAGGATTTAGACCAACCATTGCTGACGTTGTGGTCAATTTGGAGAGGGCTTTTGGTTATTTCTGGTAG 1413 0.448 MANSGASRVHSFASILEYAIKSMGGDLGALPRRGFALAVEDAWNSMGGDLGALPVHAFASIVENAISSISGDLGISHSPVHSFASIVENAISSISGDLGTSRSPNHGFASTVENAINSITGDLGTSHSPVHDFASILENAISSITGDSGISHSPVHGFAPTVENAIRSIAGDSEISHSPVHGFQVFTLVELAAATNNFSVDNMIGGGSFSVVYRGKLVDGSEVAIERDEMWSCRTHMQSFLSVWWRTSDLTFLSGLRPKNMVGLVGLCEEKDERLLVYEFTKNGSLYNHLHCNGSNALNSWKMRIKIALDASRGIEYLHKYGVPSTIHGDIRSSKILLDADWTAKVCNFGKAAGTIGYIDPEYLTRHVLTEKSDVYGFGVVLLELLTGKRPICGEDGGTRSHVITFAEPAILAGDFVKILDPRVGKPRVNEAKAVQLMAYTAISCVNVKGFRPTIADVVVNLERAFGYFW 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02100 470 SUPERFAMILY Protein kinase-like (PK-like) 175 459 IPR011009 -
Spst1g02100 470 ProSiteProfiles Protein kinase domain profile. 198 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02100 470 Gene3D Transferase(Phosphotransferase) domain 1 281 467 - -
Spst1g02100 470 Gene3D Phosphorylase Kinase; domain 1 165 280 - -
Spst1g02100 470 Pfam Protein tyrosine and serine/threonine kinase 200 393 IPR001245 GO:0004672|GO:0006468
Spst1g02100 470 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 170 466 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02100 Spst-Chr1 29228302 29229714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02100 167 466 Receptor kinase-like Gene Family AT3G55950 51.506 3.41e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Spst1g02100 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02100 - - pvu:PHAVU_001G243700g 538.495