LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02099	ATGAGGAGTGTTGAGGAGTCAAATGAGATAGAATATAATGTTGAAGGTTTACAAATATTCAGCCTGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCAATTCACAATAAGATTGGTGCTGGAAGCTTTGGTGTTGTATACAGAGCCAAACTCGTTGATGGTTGTGAGGTGGCTATCAAGAGGGACCAGACCTGGCCAGAGAGAAAAATTGAAACGAAGTTTGAATTGACCTTGTTGTCCCGGTTACGCTATAAGAACGTGGTTGAGCTGATTGGGTTCTGTGAGAAGAAAGACGAAAGGGTTTTGGTATATGAAGAATGGATCATTGTACGATCATATGCATGGCAAGAACAGCGTGGAGAAGGATCTGCAAGAGTATCTGGTTTTGGATTTTTGTTGTATTCGTTTGGAGTAGTACTGCTTGAACTGTTAATGGGAAAGACAGCTGATGATTTCTCTCTATTTCATGGGAAAGGTGGAAGTAACCGTCCGTTAAGTGTGGTAGAGTTTGCAGTGCCTGCTATTATGGATGGACACTTGGTGGAAATTTTGGATTCAAGGGTTGGACTACCTGATGTGAATGAAGCAGAGGCACTGCAGTTATTGGCCTATACCGCTGTCAATTGTGTGACAAGAAAAGGAAAAGATAGGCCAACCATGGCTGAGAATGATATGTTCAGAAAACCAATAAAAATAGCAAGGTTTAACTTTGAGGGAGAACCCCTAGAGTTATCTGATGCAGCAACAACAGCCAAGGCCAAAACTAACCTAATACATCTTGCATTGCTTGGCAACTTCTCAACACCTTCTCTTGGGTTGACTTGCGCCTTCGCAGCACTCTGTCTCTTCCATATAGAGGGAGTAATGGATCTCCAGTCCTTCAACAAGGATCATACATATCCATATATACTTTCACTTGCAAAGAATCAAATGGGTGATGAAATTTTTGAGAGCATTGAAATGAGCTATATGACAGTTGATGCAACAAGTTATAGCTGGATATTGGACAGAGCGATAAGGAGTGATACTGATTCAAGTTTGGGAGCATCCCCTGTCCATAGTTTTTCTTCAGTGGTGGACTGTGCCATAAGGAGTAGGACTCCCCTGACTGAGCTTGTAGCAGCCACCAACAATTTCTCACTTCACAACAAGATTGGTGCTGGAAGCTTTGGAGCTGTCTACGGAGCCAAACTCGTTGATGATCGTGAGGTGGCTGTTAAGAGGGGTGAAGCCTGGCCAAAAAGAAAGATTAAAATAAAGTCTGAGTTGACCTTCTTGTCTCGGCTACACCACAAGCACTTGGTTGGACTAGTTGGGTTCTGTGAAGAGAAAGATGAGAGACTCTTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAGGGTAGCAGTGTGTTGAACTATTGGAAAATGAGGATCAAAATTGCTTTGGATGCTGCGCGGGGAATAGAATATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATCAAGTCTTCTAATATTCTTATTGATGCTACTTGGACTGCAAGAGTATCAGATTTTGGATTGTCCTTGATGAGTCCGGAACCTGACCATGATTACCGTCCAATGAAGGTAGCAGGAACCCTTGGATACATTGATCCTGAGTACTATGGTTTAAATGTATTGACGACAAAGAGTGATGTTTATGGGCTTGGAATTGTACTGCTCGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGACGAAGATGGAGGCACCCCACTAAGTGGCACCCCACTAAGTGTGGTGGACTTTGCAGTGCCTCCTATTTTGGCCGGAGAATTGGTGAAAATTTTGGATCCAAGGGTTGGACCACCTGATGTGACTGAGGCAGAAGCAGTGGAATTGGTGGCCTATACAGCTATCCATTGTGTGAATTTAGAAGGAAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTGGAGAGGACTTTGGCTATTTGTGAGAGTAGCCATGATAGCATTTCCAGTGACACTATCCATTGTGTGAATTTGGAAGGGAAAGATAGCCCCACCATGGCTGACACTGTGGTCAATTTGGAGAGGGATTTGGCTACTTCTGAGACTAGGCATGATAACATCTCCCGTGGCCTTATCTCTTGCTTCGATCTCGATGAAAGCAAGACATCAATGAAAAGATAG	2208	0.4293	MRSVEESNEIEYNVEGLQIFSLAELVAATNNFSIHNKIGAGSFGVVYRAKLVDGCEVAIKRDQTWPERKIETKFELTLLSRLRYKNVVELIGFCEKKDERVLVYEEWIIVRSYAWQEQRGEGSARVSGFGFLLYSFGVVLLELLMGKTADDFSLFHGKGGSNRPLSVVEFAVPAIMDGHLVEILDSRVGLPDVNEAEALQLLAYTAVNCVTRKGKDRPTMAENDMFRKPIKIARFNFEGEPLELSDAATTAKAKTNLIHLALLGNFSTPSLGLTCAFAALCLFHIEGVMDLQSFNKDHTYPYILSLAKNQMGDEIFESIEMSYMTVDATSYSWILDRAIRSDTDSSLGASPVHSFSSVVDCAIRSRTPLTELVAATNNFSLHNKIGAGSFGAVYGAKLVDDREVAVKRGEAWPKRKIKIKSELTFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPEPDHDYRPMKVAGTLGYIDPEYYGLNVLTTKSDVYGLGIVLLELLTGKRAIFKYDEDGGTPLSGTPLSVVDFAVPPILAGELVKILDPRVGPPDVTEAEAVELVAYTAIHCVNLEGKDRPTMADIVVNLERTLAICESSHDSISSDTIHCVNLEGKDSPTMADTVVNLERDLATSETRHDNISRGLISCFDLDESKTSMKR	735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g02099	735	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	504	516	IPR008271	GO:0004672\|GO:0006468
	Spst1g02099	735	SUPERFAMILY	Protein kinase-like (PK-like)	22	222	IPR011009	-
	Spst1g02099	735	ProSiteProfiles	Protein kinase domain profile.	379	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g02099	735	Gene3D	Transferase(Phosphotransferase) domain 1	454	685	-	-
	Spst1g02099	735	Gene3D	Transferase(Phosphotransferase) domain 1	133	231	-	-
	Spst1g02099	735	Gene3D	Phosphorylase Kinase; domain 1	1	105	-	-
	Spst1g02099	735	Gene3D	Phosphorylase Kinase; domain 1	349	453	-	-
	Spst1g02099	735	SUPERFAMILY	Protein kinase-like (PK-like)	361	663	IPR011009	-
	Spst1g02099	735	ProSitePatterns	Protein kinases ATP-binding region signature.	38	60	IPR017441	GO:0005524
	Spst1g02099	735	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	134	222	IPR044815	GO:0004674
	Spst1g02099	735	ProSiteProfiles	Protein kinase domain profile.	32	356	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g02099	735	Pfam	Protein kinase domain	380	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g02099	735	Pfam	Protein kinase domain	33	105	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g02099	735	ProSitePatterns	Protein kinases ATP-binding region signature.	385	407	IPR017441	GO:0005524
	Spst1g02099	735	SMART	serkin_6	379	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02099	Spst-Chr1	29206253	29213582	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02099	369	679	Receptor kinase-like Gene Family	AT3G55950	69.159	1.01e-136	421

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Spst1g02099		Pkinase	2e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02099	-		-	vra:106757659	528.865