Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02091 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTCGCAGTACCTACACAAATACTTCCTCATGTCACGGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGACAAGCAGAGAAAAGGCGCAGAGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTGTCAATTGACTGTGACCATGTTCAAGATGAAAGCTGCACTAAAGTAAACAAATTGAAGGACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCGGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGATATAGCCAGTGTGGGTGGCAGGATCAAAAGCATATTGGTGCTTTGTTCAAAGGATAGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATTGCTTCATCATCCATGACATCTAATTGTCCCACTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGTCTACAGTAA 819 0.4359 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAAEERAISASKSHRQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVQDESCTKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSHCLQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02091 272 Coils Coil 89 109 - -
Spst1g02091 272 PANTHER TRANSCRIPTION FACTOR BHLH30 74 268 IPR045847 GO:0003700|GO:0006355
Spst1g02091 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 136 IPR036638 GO:0046983
Spst1g02091 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Spst1g02091 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Spst1g02091 272 CDD bHLH_AtAIG1_like 78 155 - -
Spst1g02091 272 Gene3D - 77 141 IPR036638 GO:0046983
Spst1g02091 272 SMART finulus 89 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02091 Spst-Chr1 29111655 29112759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02091 21 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.424 4.80e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g02091 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02091 - - gmx:100799687 503.827