Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02090 ATGTCGAACCCAGATTCTCGATCATTCAGTTGGCATTATACGGAACTCGATGACAGAGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATCTACACGCGCTGGGTTTGCCGCTACCAAGGACGCCTTCCCACTACAGCGTTCTCCACCGCCTTTCACGCGCCGCCTCTCCCGCCATCGCAGGGACTGGACCCCGAAACCATCAAGAAACTGCCCATAATCCTCCACCACGCTCCGTCGGACCGCGACGAAAGCGCGTGGGACGAAACGGAGTGTTGTATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTACCGGCGTGTGACCATTATTTCCATTGTGAATGTGTTGACAGGTGGCTCACTCTCTTCTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCTTTCCCAAATATTTTGATTCAGGAACCACCCCTCAGAATTGATTTCCAATTGTAG 525 0.5181 MSNPDSRSFSWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFSTAFHAPPLPPSQGLDPETIKKLPIILHHAPSDRDESAWDETECCICLGEFRDGEKVKVLPACDHYFHCECVDRWLTLFSSCPLCRASLKVESSFPNILIQEPPLRIDFQL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02090 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Spst1g02090 174 SUPERFAMILY RING/U-box 97 155 - -
Spst1g02090 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Spst1g02090 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 155 IPR013083 -
Spst1g02090 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 156 - -
Spst1g02090 174 SMART ring_2 107 148 IPR001841 -
Spst1g02090 174 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02090 Spst-Chr1 29104629 29105153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02090 11 157 C3H Transcription Factor Family AT3G11110 44.000 6.28e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02090 - - gmx:100803278 338.191