Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02089 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCGTACCCAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGTAAGAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCCAGCAATGTGAGCAAGATCTTGATTGAAGTGTCGGAAGAGCAGAGAGAGGACACGGTGAATTCTCTGGCATATGAGGCCGAGGCAAGGCTGAGAGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTCTTGCAAAGGAAGATGGTGGAGCTTCAGCATGATCTGGCCATTGCAAAGGATCGTCTTGCACGTTGTCACGCTGCTGCTACCGTTCTTCCTTCTCCTGATGTCTTGCATGCCCATGTTAGCTTGCCTCCATTCCCTGACTTTTGCACTTCTTCCAATGATTTCAATGATATCTTCTGCCACACTTCACCATCTCAATTATTGAGCCGCCATGAGACGGTTGATGATTTCAATCAAATCCCATATATATTCTAA 528 0.4583 MKGYEPRSSSSCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDVLHAHVSLPPFPDFCTSSNDFNDIFCHTSPSQLLSRHETVDDFNQIPYIF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02089 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 128 - -
Spst1g02089 175 Coils Coil 90 110 - -
Spst1g02089 175 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Spst1g02089 175 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02089 Spst-Chr1 29098517 29099044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02089 1 111 AS2 family AT3G11090 80.180 7.28e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g02089 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02089 - - gmx:100791250 339.732