Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02088 ATGGTGCGTGTCAAAGAAGCTCATGTTGTCACACCTTCAGACCCCACACCCAACACTGTCCTCGCACTCTCAGCACTCGACTCACAACTCTTCTTGCGCTTCACAATCGAGTATCTCCTTGTTTACCGGCCCGGCCCCGCCCTCGCCCTCGACCGCCCTTCCACCGCGGCTCGTATAAAAACCGCATTAGCCAAAGCGCTTGTTCCTTATTATCCATTTGCTGGCAGAGTCCGGGCCCGGGTCGACGGGCTGGGCCTCGAGGTTGTGTGTCGGGCCCAGGGCGCTGTCTTCATCGAAGCCTCTTCCGAACGTTACACTGCCAAGGATTTCCAGAAGGCCCCCAAAACAGTGGCCCAATGGAGAAAGCTCTTATCCCTCTACGTCACCGACGTCCTCAAAGGCTCGCCGATTCTCGTCGTCCAGCTGACATGGCTCGCCGACGGAGCCGCCGCCGTCGGTATCGGAATCAACCACTGTATCTGCGACGGCATCGGCAGCGCAGAGTTTCTGAATTATTTCTCCGATTTAGCCTCCGAGAAATGTCTCCGTCTGGGTCTCAGTGTCAGTGTGGATTCGAAACCGAAACCGAAACCGAAACCGGTTTGGGATCGACACCTTCTGAATCCGGACAGTACAACCAAGGCGAATCCAGCGATGCATGCTGAGTTCGCTGGAGTTCCTGATTTGTGCGGGTTCATGAACCGTGTGACGAGCGGGTTGAAACCTACGTGCAATGTGTTGGACGAGAGGCGGATCGAGGCGCTGAAGCGCGCGTGCGGAGGAGCGTCGTGCACGACGTTCGAGGTAGTTGCTGCGCACGTGTGGAGGAGCTGGGCTCGGGCGTTGGGGTTTCCGAAGAACCAGATGCTGAAGCTCTTGTTCAGCGTGAACGTGCGGAAGCGCGTGAAGCCAGGTTTGCCGGAGGGGTATTACGGGAACGCGTTTGTGTTGGGGTGCGCTCAGAGCAGCGCGTGGGAGTTGGGGGAGAGGGGGGTGGCGTACGGGTGTGGTGTGGTGAAGCGTGCGAAGGAGAGGGTGGACAGCGAGCACGTGCGGAGGGTGGTTGAGTTGGTGTCGGAGTCGAGGGCGAGTCCTGACTCGGTGGGGGTGCTGATACTGTCGCAGTGGTCGAGGCTGGGTCTGGAGAGGGTTGAACTCGGAATGGGAAAGCCTCTGCATGTGGGACCCATTTGCTGCGATAGGTACTGTTTGTTTCTTCCGGTGGCCGGTGAACGTCAATGTGTTAAGGTCATGGTGGCTGTCCCCATCGCCGCCGTTGACAATTTTCACCGCTTCCTCCACGAATCTAATCTATGA 1317 0.5809 MVRVKEAHVVTPSDPTPNTVLALSALDSQLFLRFTIEYLLVYRPGPALALDRPSTAARIKTALAKALVPYYPFAGRVRARVDGLGLEVVCRAQGAVFIEASSERYTAKDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVVQLTWLADGAAAVGIGINHCICDGIGSAEFLNYFSDLASEKCLRLGLSVSVDSKPKPKPKPVWDRHLLNPDSTTKANPAMHAEFAGVPDLCGFMNRVTSGLKPTCNVLDERRIEALKRACGGASCTTFEVVAAHVWRSWARALGFPKNQMLKLLFSVNVRKRVKPGLPEGYYGNAFVLGCAQSSAWELGERGVAYGCGVVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGKPLHVGPICCDRYCLFLPVAGERQCVKVMVAVPIAAVDNFHRFLHESNL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02088 438 PANTHER ACYL TRANSFERASE 4 2 433 - -
Spst1g02088 438 Gene3D - 1 224 IPR023213 -
Spst1g02088 438 Pfam Transferase family 1 430 - -
Spst1g02088 438 Gene3D - 239 435 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02088 Spst-Chr1 29085702 29087018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02088 2 435 Monolignol Biosynthesis Gene Families AT5G48930 27.193 2.72e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02088 - - pvu:PHAVU_001G244800g 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02088 1 29085702 29087018 Spst8g00507 8 4809861 4811171 PCT