Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02075 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGCACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTTGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTGTTCAGCAGAGATCAGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGGGCCATATCCTATCTGCAACACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATATTCTGCATCCAGATGCAACAGGAACCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTACCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCACAAGAGAGAGCATTTTTGGACATGACATGGTTTCCTGA 498 0.4578 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPVQQRSDAVSSLVYEAHARVRDPVYGCVGAISYLQHQVSELQMQLAVAQAEIFCIQMQQEPVMPNPEMENPDQKSYLLQNELPQYLNYASSSNVIYDAVTRESIFGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02075 165 Coils Coil 85 105 - -
Spst1g02075 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 124 - -
Spst1g02075 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Spst1g02075 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02075 Spst-Chr1 28998197 28998960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02075 3 117 AS2 family AT2G30130 85.217 7.22e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g02075 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02075 - - gmx:121173085 304.293