Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02073 | ATGGATTCCGAATTCCCCAACAAAGCGTTGACGAGCACGCGTTTTTCCGACTTGAACCCGCCACTTTCCGACCTCGTTCTCCAAGCCCTATCACAGTCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACTATCCCTTTGCTCTGCAGCTTCAAGGACGTTGCCGTCGACGCTGCCACAGGTTCCGGTAAAACCCTAGCCTTTGTCGTCCCTCTCGTCGAGATTCTCCGCCGGTCCTCCTCTCATCCCAAGCCTCACCAGGTACTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACCCAAATATATCATGTGGCGCAACCTTTCATTTCGACATTGGTGAACTTAAACTCCATTCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAATGAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACACCAGGGCGGTTATACGACATAATGAATCGGATGGATGTCTTGGACTTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTGGATATGGGATTCCAAAAGCAGATAACTTCTATTATATCTCAATTACCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTAAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGGCCCTGCATCATCAAAACAACCAGAATCTTCAAAAACACCTTCTGGACTTCACATCGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATCCTTATTAAGAACCGCTCTAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTTCTCTTTCTGTTTTGAAAGGGTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCATTAGCTTCATTTACATCCCTTTCGAATGGAATTCTGCTATGTACAGATGTAGCTGCACGTGGACTTGACATACCAGGCGTTGACTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGAGTAGGTCGAACTGCTCGACTGGGCAAACAGGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTCCAAGAGAGAATATGTTCTGATGATGCACCAGATGTTGTACCTCAGATTCGTTCTGCTGCAAAAAAAGACCGTGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGGAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACACCATTCACTTTCCACTGAAGGATTTGAAGCGGTTGAAGATATAAATTTTGAGGACATTAAGTACAGGGACAAATCACGTGAGAAGCAAAGGAGGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAGCCGAAGAAAACCCTAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAGTAGAAGACGAGGAAGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA | 1764 | 0.4354 | MDSEFPNKALTSTRFSDLNPPLSDLVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSHPKPHQVLGIIISPTRELSTQIYHVAQPFISTLVNLNSILLVGGAEVKADIMKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENGPASSKQPESSKTPSGLHIEYLECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGAVLPSLSVLKGFSLIPLHGKMKQSAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICSDDAPDVVPQIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFEAVEDINFEDIKYRDKSREKQRRKNLQAKKEAKEKEPKPQKPKKTLDAVMRKKTARQRRAQQTVEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL | 587 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02073 | 587 | MobiDBLite | consensus disorder prediction | 504 | 555 | - | - | |
Spst1g02073 | 587 | Coils | Coil | 503 | 523 | - | - | |
Spst1g02073 | 587 | Gene3D | - | 254 | 489 | IPR027417 | - | |
Spst1g02073 | 587 | MobiDBLite | consensus disorder prediction | 228 | 248 | - | - | |
Spst1g02073 | 587 | Pfam | Domain of unknown function (DUF4217) | 416 | 474 | IPR025313 | - | |
Spst1g02073 | 587 | Pfam | DEAD/DEAH box helicase | 39 | 212 | IPR011545 | GO:0003676|GO:0005524 | |
Spst1g02073 | 587 | CDD | DEADc_DDX55 | 26 | 224 | - | - | |
Spst1g02073 | 587 | SMART | helicmild6 | 290 | 375 | IPR001650 | - | |
Spst1g02073 | 587 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 224 | IPR014001 | - | |
Spst1g02073 | 587 | Coils | Coil | 537 | 564 | - | - | |
Spst1g02073 | 587 | CDD | SF2_C_DEAD | 254 | 384 | - | - | |
Spst1g02073 | 587 | MobiDBLite | consensus disorder prediction | 232 | 248 | - | - | |
Spst1g02073 | 587 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 394 | IPR027417 | - | |
Spst1g02073 | 587 | Gene3D | - | 3 | 227 | IPR027417 | - | |
Spst1g02073 | 587 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 266 | 422 | IPR001650 | - | |
Spst1g02073 | 587 | SMART | DUF4217_3 | 413 | 476 | IPR025313 | - | |
Spst1g02073 | 587 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
Spst1g02073 | 587 | SMART | ultradead3 | 34 | 254 | IPR014001 | - | |
Spst1g02073 | 587 | Pfam | Helicase conserved C-terminal domain | 263 | 375 | IPR001650 | - | |
Spst1g02073 | 587 | PANTHER | RNA HELICASE | 11 | 516 | - | - | |
Spst1g02073 | 587 | FunFam | RNA helicase | 9 | 227 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02073 | Spst-Chr1 | 28939189 | 28943689 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02073 | 13 | 384 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.223 | 1.33e-43 | 159 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02073 | K14809 | - | gmx:100801482 | 1060.83 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02073 | 1 | 28939189 | 28943689 | Spst1g02073 | 1 | 28939189 | 28943689 | ECH |