Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02073 ATGGATTCCGAATTCCCCAACAAAGCGTTGACGAGCACGCGTTTTTCCGACTTGAACCCGCCACTTTCCGACCTCGTTCTCCAAGCCCTATCACAGTCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACTATCCCTTTGCTCTGCAGCTTCAAGGACGTTGCCGTCGACGCTGCCACAGGTTCCGGTAAAACCCTAGCCTTTGTCGTCCCTCTCGTCGAGATTCTCCGCCGGTCCTCCTCTCATCCCAAGCCTCACCAGGTACTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACCCAAATATATCATGTGGCGCAACCTTTCATTTCGACATTGGTGAACTTAAACTCCATTCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAATGAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACACCAGGGCGGTTATACGACATAATGAATCGGATGGATGTCTTGGACTTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTGGATATGGGATTCCAAAAGCAGATAACTTCTATTATATCTCAATTACCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTAAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGGCCCTGCATCATCAAAACAACCAGAATCTTCAAAAACACCTTCTGGACTTCACATCGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATCCTTATTAAGAACCGCTCTAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTTCTCTTTCTGTTTTGAAAGGGTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCATTAGCTTCATTTACATCCCTTTCGAATGGAATTCTGCTATGTACAGATGTAGCTGCACGTGGACTTGACATACCAGGCGTTGACTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGAGTAGGTCGAACTGCTCGACTGGGCAAACAGGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTCCAAGAGAGAATATGTTCTGATGATGCACCAGATGTTGTACCTCAGATTCGTTCTGCTGCAAAAAAAGACCGTGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGGAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACACCATTCACTTTCCACTGAAGGATTTGAAGCGGTTGAAGATATAAATTTTGAGGACATTAAGTACAGGGACAAATCACGTGAGAAGCAAAGGAGGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAGCCGAAGAAAACCCTAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAGTAGAAGACGAGGAAGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1764 0.4354 MDSEFPNKALTSTRFSDLNPPLSDLVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSHPKPHQVLGIIISPTRELSTQIYHVAQPFISTLVNLNSILLVGGAEVKADIMKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENGPASSKQPESSKTPSGLHIEYLECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGAVLPSLSVLKGFSLIPLHGKMKQSAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICSDDAPDVVPQIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFEAVEDINFEDIKYRDKSREKQRRKNLQAKKEAKEKEPKPQKPKKTLDAVMRKKTARQRRAQQTVEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02073 587 MobiDBLite consensus disorder prediction 504 555 - -
Spst1g02073 587 Coils Coil 503 523 - -
Spst1g02073 587 Gene3D - 254 489 IPR027417 -
Spst1g02073 587 MobiDBLite consensus disorder prediction 228 248 - -
Spst1g02073 587 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Spst1g02073 587 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Spst1g02073 587 CDD DEADc_DDX55 26 224 - -
Spst1g02073 587 SMART helicmild6 290 375 IPR001650 -
Spst1g02073 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Spst1g02073 587 Coils Coil 537 564 - -
Spst1g02073 587 CDD SF2_C_DEAD 254 384 - -
Spst1g02073 587 MobiDBLite consensus disorder prediction 232 248 - -
Spst1g02073 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Spst1g02073 587 Gene3D - 3 227 IPR027417 -
Spst1g02073 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Spst1g02073 587 SMART DUF4217_3 413 476 IPR025313 -
Spst1g02073 587 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Spst1g02073 587 SMART ultradead3 34 254 IPR014001 -
Spst1g02073 587 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Spst1g02073 587 PANTHER RNA HELICASE 11 516 - -
Spst1g02073 587 FunFam RNA helicase 9 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02073 Spst-Chr1 28939189 28943689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02073 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.223 1.33e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02073 K14809 - gmx:100801482 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02073 1 28939189 28943689 Spst1g02073 1 28939189 28943689 ECH