Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02067 ATGGAACAGGACAACGTTTGGAAGTTAATTCCTGAGCTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCTTTCCAATTTCTGTGGCAAAATATTGGAGGGTCTATGGATCCAAGACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTCATATCTCATTCACCTGGATCTGGTAAAACTTTTCTTATCATTGCATTTCTCATTAGCTATTTAAAGTTGTTCCCAGGGATGAAGCCTCTTGTCCTTGCTCCAACAACCACGCTTCACTCTTGGCACAAAGAATTCATCAAATGGGATATTTCTATGCCCGTGTATGTGATTCATGGAGGTAGTGGACCTCAGACAGATGACATGCAAAATTCAGTATCTCTTCCTTGTTTTCCAAATCCAAGCAAAGATGTCAAACATATTTTGAACTGCTTGGACAAGATAAAAAAGTGGCAAACACACCCAAGTGTTCTGGTCATGAGTTATACCTCATTCTTAGCATTAATGAGAGAGGGTTCAGAGTTTGCACACAGGAAGTATTTGGCTAAAGCATTGAGGGAAAGACCTGGGATCCTGATACTTGATGAAGGGCACAATCCTAGAAGTACCAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTAGAAACAGATATAAGAATACTACTTTCTGGTACATTATTCCAGAACAACTTTTGCGAATACTTTAACACACTTTGCTTGGCAAGACCAAAGTTTATATACGAAGTGCTGGATGAGTTAGATTCGGATGTCAAAAGGAGAAGCAAAACGCCAGAGAAGGCACGTCATCTGTTAGAGTCTCAAGCAAGAACTTTGTTCATAGACAACATTGCTAAGAAAATTGACTCAAATAATGGAAATGAAAGGATGCAAGGCCTAAACATGTTGAGAGGAATCACAAATGGTTTCATAGATATTTATGAGGGTGCAAATTTTGACAGTGTTCCTGGCTTGCAAATGTACACGTTGCTCATGAATACAGCGGACATGCAGAGTGAAATTTTGCTGAAACTGCATAGGAAACTGGCTGAGTGCACAGGGTACCCTCTAGAGTTGGAGCTTTTGATAACCCTTGGATCAATACATCCATGGTTGGTTAAAACAGCCTCATGTGCAAACAAGTTCATCGCTTTAGACCAACTGCAACAGCTAGATAAATGCAAGTTTGATTTGAAAGGAGGGTCAAAAGTTAAATTTGTTATGGCCCTTGTTCTCCGTGTTAAAGAGAAGGAGAAAGTACTTATATTTTGTCACAATCATGCACCTGTGAATTTATTGGTAGAGTTATTTGAGATGGTCTTTCAATGGAAAAAAGATAGAGAAATCTTGTTGCTTAATGGGAAACAAGACCTCTTTGAACGTGGAAAAGTGATAGATAAGTTTGAAGACCCTAGAGGAGCATCAAAGGTACTTCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACATCAGCGTCAAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCAAAGACAAAACAGGCTATTGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGGCAACAGGCACGTTAGAAGAAGATAAGTACAGAAGAACAACTTGGAAAGAGTCGGTTTCTAGCATGATTTTTACTGAGGCCTTTGAGGAGAACACTTCACATTCAAAAGCAGAGATGATTGAAGATGATATACTGAGGGAGATGGTGGAGGAGGACAAGTCCAAATCAATTCATATGATACTCAAGAATGAAAAGGCTTCCACAAACTGA 1794 0.3969 MEQDNVWKLIPELREKMHVHQKKAFQFLWQNIGGSMDPRLMDAESKRRGGCVISHSPGSGKTFLIIAFLISYLKLFPGMKPLVLAPTTTLHSWHKEFIKWDISMPVYVIHGGSGPQTDDMQNSVSLPCFPNPSKDVKHILNCLDKIKKWQTHPSVLVMSYTSFLALMREGSEFAHRKYLAKALRERPGILILDEGHNPRSTKSRLRKVLMKVETDIRILLSGTLFQNNFCEYFNTLCLARPKFIYEVLDELDSDVKRRSKTPEKARHLLESQARTLFIDNIAKKIDSNNGNERMQGLNMLRGITNGFIDIYEGANFDSVPGLQMYTLLMNTADMQSEILLKLHRKLAECTGYPLELELLITLGSIHPWLVKTASCANKFIALDQLQQLDKCKFDLKGGSKVKFVMALVLRVKEKEKVLIFCHNHAPVNLLVELFEMVFQWKKDREILLLNGKQDLFERGKVIDKFEDPRGASKVLLASITACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKESVSSMIFTEAFEENTSHSKAEMIEDDILREMVEEDKSKSIHMILKNEKASTN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02067 597 Pfam Helicase conserved C-terminal domain 400 516 IPR001650 -
Spst1g02067 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 247 IPR027417 -
Spst1g02067 597 Pfam SNF2-related domain 43 274 IPR000330 GO:0005524|GO:0140658
Spst1g02067 597 Gene3D - 352 597 IPR027417 -
Spst1g02067 597 Gene3D - 2 283 IPR038718 -
Spst1g02067 597 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 596 IPR044567 GO:0080188
Spst1g02067 597 SMART helicmild6 432 517 IPR001650 -
Spst1g02067 597 CDD SF2_C_SNF 399 528 - -
Spst1g02067 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 42 242 IPR014001 -
Spst1g02067 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 572 IPR001650 -
Spst1g02067 597 SMART ultradead3 13 254 IPR014001 -
Spst1g02067 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 564 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02067 Spst-Chr1 28884461 28886254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02067 446 576 RAD5 or RAD16-like Gene Family AT5G05130 33.333 2.12e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst1g02067 SNF2_N 6.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02067 K10875 - gmx:100781856 977.622