Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02059 ATGCTCATCATGAATAGTTACAACTTACAAGGAAAACTAGCCGTTACTCACTGTTTCTCACAAACAAAGACAACCTTCGAACTCTGCATTCCTTCTCTCTCTATTATACTCTCAACCCCGCGCGCACCTACACTTCTTTATGTCATCACGTGCTCCTTCTCATTCTTCCTCTCTACAAAAACCATCCTTCAACTGTTCCTATCTATCTCCCCTTCACTTCCAACACACTCTCTTTTTGTTCCACTAATTCAAACATCTCTTTTCATTATGGTAGTAGAGAAAATCAACCTTAACTCTTGTCAGTTTTCACAACATGAAACAAGAAATGCAGACCATATTTCTGACAAGAAGAAGGAAAGATGGAAGAAGACCCCGCCCAAGGCACACAACATCCCATGTTGTTTTCTGTTTCTCTTCTGGGTGTGGATTCTTGTTCTCGCCACATGCTTGAAACCAGTTTTGTGTGAAGACGAGGGTTGGGATGGAGTGGTTGTGACAGCATCAAACTTCTTAGCACTTCAAGCGTTCAAGCAAGAGTTGGTTGATCCTGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGTTTTGGAGCTTGTTCCGGAGGTTGGGCTGGTATCAAGTGTGCTAGGGGAGAGGTTATTGTAATCCAGCTTCCATGGAAGGGGTTGAGAGGGCGTATTACTGATAAGATTGGTCAGCTTCAAGGCCTGAGGAAGCTTAGTCTCCATGATAATCAAATTGGAGGTTCAATCCCTTCTACTCTGGGACTTCTTCCTAACCTAAGAGGGGTTCAATTATTCAACAATAGGCTAACAGGTTCCATCCCTCCTTCCTTAGGTTACTGTCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCCAATTCCACCAAGCTTTATTGGCTTAATTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCAGCTAGCATAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAACAATCTCTCTGGCTCCCTTCCTAACTCTTGGGGTGAGAGTCTCAAGCGTGAAGAGTTCTTTAGACTTCAAAATTTGATCCTAGATCATAACCTTTTTACTGGAAATGTTCCTTCTTCTTTGGGTAGCTTAAGAGAACTCAATGAGATTTCCCTTGGTCATAATAAGTTCAGTGGAGCTATACCAAATGAAATAGGAACTCTTTCTAGGCTTAAGACACTAGATATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCTTCTCTAATTTATCCTCGCTTACGCTGCTAAATGCAGAGAACAACCTCCTTGAAAATCAAATCCCTGAAACTTTAGGGACTTTACGCAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTCGTGGACATATTCCTTCTAGTATCGCAAACATTTCCACTATTAGGCAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGTTTCCTTTGACAGTCAACGTAGTCTTCATCTCTTCAATGTTTCTTACAATAGCCTCTCAGGTTCTGTTCCCCCTGTTCTTGCCCGGAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCTTCAACACCATGTCCTTCACAAGCTCCATCAGGAGTAATTGTTGCCCCACCTCATGAAATGTCAAAACACCACAATCATAGGAAGCTAAGTACCAAAGACATTATTCTCATAATAGCAGGAGTTCTTCTAATAGTCCTGATTACACTTTTTTGCATCCTTCTCTTCTGCCTGATCAGAAAGAGATCAACATCAAAGACAGAGAATGGCAGAGGTGCGGGGAGAGCTGGCACTATGAGGACAAAAAAAGGAGTCCCTCCTGTTGCTACTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATTGCTTTTACAGCTGATGATCTCTTGTGCGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTTTATAAGGCGATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGAGAAAAGATCGCTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTGTTGCTTCTTTCCTACATGGTAAGTTTGGTTTTGCAAATAGGGGAAAACTTATACATAGTAGTGGAACAGAAACATCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTTTACCTCCATTCCCAGGAGAACATTATACATGGGAACCTCACATCCAGCAATGTGTTGCTTGATGAGAATACAAATGCAAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCTGAGCTCTCAAAGCTCAAGAAAGCCAACTCCAAAACTGATATCTATAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTGCCTCAGTGGGTTGCCTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCAGACTTAATGAGAGATGCTTCAACAGTTGGCGATGAGTTGCTAAATACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTTCAGCAGTTAGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCAGGGGACGATTCTATAGCATAG 2889 0.4247 MLIMNSYNLQGKLAVTHCFSQTKTTFELCIPSLSIILSTPRAPTLLYVITCSFSFFLSTKTILQLFLSISPSLPTHSLFVPLIQTSLFIMVVEKINLNSCQFSQHETRNADHISDKKKERWKKTPPKAHNIPCCFLFLFWVWILVLATCLKPVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGFGACSGGWAGIKCARGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTLGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGAIPYSLANSTKLYWLNLSFNSFSGPLPASITHSLSLTFLSLQHNNLSGSLPNSWGESLKREEFFRLQNLILDHNLFTGNVPSSLGSLRELNEISLGHNKFSGAIPNEIGTLSRLKTLDISNNALNGSLPATFSNLSSLTLLNAENNLLENQIPETLGTLRNLSVLILSRNQFRGHIPSSIANISTIRQLDLSMNNLSGEIPVSFDSQRSLHLFNVSYNSLSGSVPPVLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSGVIVAPPHEMSKHHNHRKLSTKDIILIIAGVLLIVLITLFCILLFCLIRKRSTSKTENGRGAGRAGTMRTKKGVPPVATGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGKFGFANRGKLIHSSGTETSIDWPTRMKIAQDMARGLFYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDASTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTASPGDDSIA 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02059 962 ProSiteProfiles Protein kinase domain profile. 662 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02059 962 PRINTS Leucine-rich repeat signature 407 420 - -
Spst1g02059 962 PRINTS Leucine-rich repeat signature 284 297 - -
Spst1g02059 962 FunFam Os07g0541700 protein 757 838 - -
Spst1g02059 962 Gene3D Transferase(Phosphotransferase) domain 1 740 959 - -
Spst1g02059 962 FunFam Leucine-rich repeat receptor-like protein kinase 647 738 - -
Spst1g02059 962 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 355 552 - -
Spst1g02059 962 SUPERFAMILY Protein kinase-like (PK-like) 666 949 IPR011009 -
Spst1g02059 962 Gene3D Phosphorylase Kinase; domain 1 668 739 - -
Spst1g02059 962 CDD STKc_IRAK 668 946 - -
Spst1g02059 962 Pfam Leucine rich repeat 361 420 IPR001611 GO:0005515
Spst1g02059 962 Gene3D Ribonuclease Inhibitor 168 325 IPR032675 -
Spst1g02059 962 Gene3D Ribonuclease Inhibitor 326 422 IPR032675 -
Spst1g02059 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 360 946 - -
Spst1g02059 962 Gene3D Ribonuclease Inhibitor 423 550 IPR032675 -
Spst1g02059 962 Pfam Leucine rich repeat N-terminal domain 171 207 IPR013210 -
Spst1g02059 962 SMART LRR_typ_2 257 281 IPR003591 -
Spst1g02059 962 SMART LRR_typ_2 407 430 IPR003591 -
Spst1g02059 962 SMART LRR_typ_2 455 478 IPR003591 -
Spst1g02059 962 SMART LRR_typ_2 233 256 IPR003591 -
Spst1g02059 962 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 166 354 - -
Spst1g02059 962 MobiDBLite consensus disorder prediction 609 630 - -
Spst1g02059 962 SUPERFAMILY L domain-like 206 542 - -
Spst1g02059 962 Pfam Protein tyrosine and serine/threonine kinase 665 943 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02059 Spst-Chr1 28843542 28846673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02059 160 948 Receptor kinase-like Gene Family AT3G51740 62.735 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst1g02059 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02059 - - pvu:PHAVU_001G246800g 1533.08