Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02044 ATGGTTTCTGGAGAGCAAAAGAGAGCAGAACTGCGTGAGCAGCTGCAACTTCTTCGTTCTATTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAATAGATGCATCAAAGTATATCCAAGAGTTGAAGCAAAAGGTAGAAAAATTGAATCAAGACGTAACCAATGCACAAGCTTCAAGCGACCAAAATACTTTGCCCATGGTCACAGTAGAATCCACGGAAAAGGGTTTTCTTATTAATGTTTTTTCATCAAAGAGTTGCCCTGGTCTGTTTGTTTCCATATTGGAGTCATTTGAAGAGATGAGTCTTAATGTGCTTGAAGCTAGGGTTACTTGTACGGACACCTTTCGATTTCATGCTGTTGGAGGAAAAAACGAAGAACAAGGTGAGAATATTGATGCAAGAGCTGTGAAGCAGGCAATGGGACAAGCAATAAAGAACTGGAGCCAAAATGCTGGCCAAAAGTAA 471 0.4013 MVSGEQKRAELREQLQLLRSITNSHALNKTSIIIDASKYIQELKQKVEKLNQDVTNAQASSDQNTLPMVTVESTEKGFLINVFSSKSCPGLFVSILESFEEMSLNVLEARVTCTDTFRFHAVGGKNEEQGENIDARAVKQAMGQAIKNWSQNAGQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02044 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 154 - -
Spst1g02044 156 Coils Coil 33 60 - -
Spst1g02044 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 60 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02044 Spst-Chr1 28701873 28703290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02044 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.556 1.20e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02044 - - gmx:100813030 249.21