Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02030 ATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGCGTGTTCGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATTGATGAGGCAGACATGAAGTTAGACAGTCAGTCAGAGGATGCTTCTCATGGTATATTGGGAGCACCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCTAGACAGCAGGGGATGTATATAGGTGGTGGATTGGACTCTAATCATCTGGGTTTTGCTGGATCGGTAAATTCAGGAATTACAACCTTCGAGATGGAGTATGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGACATAGAGCTCAGGATTCTGGTAGATGTTATGATGAACCACTATGCTGAAATCTTTCGTATGAAATCTGCTGCTGCCAAAGCAGATGTTTTCTATGTCATGTCTGGTATGTGGAAAACAACAGCTGAAAGATTTTTCTTGTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGGCCCCTCATTGAACCCCTCACAGACCAACAGCGGTTGGATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTATCACAAGGTATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAGTTAATGGAAGGAACTTACATTCCACAGATGACCTCTGCAATGGAGAACTTGGAAGTTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAAGAAACCTTGCAGCAGATGTCTCGAACACTTACAATCCGTCAGGCGGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATAGACCCCGTGAACCTGCTTAG 1089 0.4527 MNSASPQFVSSRRMSVFDPIHQISMWGEGFKSNGNLSASMPLIDEADMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIELRILVDVMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTDQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQLMEGTYIPQMTSAMENLEVLVSFVNQADHLRQETLQQMSRTLTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02030 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Spst1g02030 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 360 - -
Spst1g02030 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Spst1g02030 362 Gene3D - 77 126 - -
Spst1g02030 362 CDD bZIP_HBP1b-like 78 130 - -
Spst1g02030 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Spst1g02030 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Spst1g02030 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Spst1g02030 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Spst1g02030 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Spst1g02030 362 Coils Coil 97 124 - -
Spst1g02030 362 FunFam BZIP family transcription factor 77 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02030 Spst-Chr1 28556195 28559992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02030 1 362 Calmodulin-binding Proteins AT5G10030 70.604 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst1g02030 DOG1 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02030 K14431 - gmx:100793353 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02030 1 28556195 28559992 Spst1g02030 1 28556195 28559992 ECH
Spst3g01406 3 17530372 17534485 Spst1g02030 1 28556195 28559992 PCT