Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02029 ATGGCCGATCACTCAGACTCTTCTCCTCTCGTGCCTCCCCTTCCCCTCACTGACCCTTCGGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACCGATGGTAGAGATTTCATAGCCCCTTGCAAGTGCAAAGGTACATCAAAATATGTACACCGAGAATGTTTGGATCATTGGCGAGCAGTTAAGGAAGGCTTTGCCTTTGCTCACTGCACTACGTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACGCTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTTCTGTCTGTCCAGCTTGTCATTGCGTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAATACTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACTTGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGTGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGGTTGTTCTGGGACTTTTTACCGTAATTGGGATATTCTACAGTGTATTGGTGGCTACCATGGTAGGTCAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGTTGACAAAGGAGTATGTCGTTGAAGACGTCGATGGAGAGCTGACTGGATCTGATTGGTCTCCCCCGGCTCTCCCACAGGAGCATGTTCAGCAGTTGAAAACATTGGGCCTACTATGA 972 0.4537 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPQEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02029 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 322 - -
Spst1g02029 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Spst1g02029 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Spst1g02029 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Spst1g02029 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Spst1g02029 323 SUPERFAMILY RING/U-box 29 86 - -
Spst1g02029 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02029 Spst-Chr1 28538525 28542490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02029 1 323 C3H Transcription Factor Family AT2G22120 86.111 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02029 - - gmx:100791777 647.891